Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c23
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           33   0.14 
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   5.3  

>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/73 (23%), Positives = 39/73 (53%)
 Frame = +1

Query: 307 VKFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFFSLLFREVNCQSQTRQD 486
           + +++ F + R++ +H V   + +G+S   + K  + + +GE F  L +E +   + R +
Sbjct: 662 ILYLAVFQVKRIRRSHFVRRWIAEGYSKCTDSKTME-DYTGELFDRLAKETDTMPEWRFN 720

Query: 487 RYNIYFIVKKLME 525
            +   +I  +LME
Sbjct: 721 SFFHEYINSRLME 733


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +1

Query: 229  ESREKGMRFFTKILTELPRDYLTVSQVKFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKN 408
            E +EK     T  + E+P  YLT S +  + +    +  D H      L+    + EM+N
Sbjct: 1665 EDKEKIKHIKTIDMNEVPLMYLTPSYIMLLQQVTSSQFIDLH---IGGLECMIGLREMEN 1721

Query: 409  YDMETSGEFFSL 444
             +++T  E  SL
Sbjct: 1722 LELQTKKELSSL 1733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,397
Number of Sequences: 37544
Number of extensions: 180105
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)