Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c23
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical ...    44   7e-05
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    33   0.095
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81549-3|CAB04468.1|  288|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z72503-3|CAE17724.1|  217|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical
           protein C24G6.3 protein.
          Length = 922

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
 Frame = +1

Query: 226 PESREKGMRFFTKILTELPRDYLTVSQVKFISKFYIDRLKDNHRVIPAVLQG-FSAIIEM 402
           PE RE+ +    ++++  P D+L   +V  +  ++I+ ++ +     AV++G    I++ 
Sbjct: 45  PEEREEAIEEIIEVISTFPMDFLQKDEVSLLLNYFINSIESSALTGGAVIRGVHHLILKS 104

Query: 403 KNYDMETSGEFFSLLFREVNCQSQTRQDRYNIYFIV 510
           KN           +LF+E N QS  +++R   Y I+
Sbjct: 105 KNLPDNFEVSLIRVLFKEGNVQSWAQKERQLQYEIL 140


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = +1

Query: 187  LVENMEGILTNKEPESREKGMRFFTKILTELPRDYLTVSQVKFISKFYIDRLKDNHRVIP 366
            LV+N++     K+ E+  KG++   +++ EL R +  + +     K  +DR +D  R+  
Sbjct: 3011 LVKNLKK--AEKQMENLSKGLQSVDEVVGELKRKFEVLMKEATQIKVDLDREQDTIRIAG 3068

Query: 367  AVLQGFSAIIEMKNYDMETSGE 432
             +++  S   E     +ET GE
Sbjct: 3069 TLVESLSGEFERWKIQIETFGE 3090


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 136 TQNVVTDIITQH----IDLITLVENMEGILTNKEPESREKGMRFFTKILTE 276
           T+N+ T   T+     I+ +   ENME  L  +  ++REK M+FF   + E
Sbjct: 159 TENIRTSYFTRQNRPIIEAMHREENMEYELKKQRAQNREKNMQFFNDHIFE 209


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 355 RVIPAVLQGFSAIIEMKNYDMETS 426
           R+ P  + G + I E+ NYD+ETS
Sbjct: 199 RMFPRFMVGVALIFELNNYDIETS 222


>Z81549-3|CAB04468.1|  288|Caenorhabditis elegans Hypothetical
           protein F55C9.4 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 373 LQGFSAIIEMKNYDMETSGEFFSLLFREVNCQSQTRQ 483
           ++G + ++E    ++E   EF  L+FR++ C +  +Q
Sbjct: 215 IKGANEVVETLYVEIEYVNEFTDLIFRDIKCWNTPKQ 251


>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical protein
            ZC376.6 protein.
          Length = 1152

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
 Frame = +1

Query: 163  TQHIDLI-TLVENMEGILTNKEP------ESREKGMRFFTKILTELPRDYLTVSQVKFIS 321
            TQH  LI  L+E  +      +P      E R +  R   + +     DY  + +V    
Sbjct: 940  TQHSVLIHALIEVCDSKRMKDDPSDFSLLEKRRQIRRIACEYIHRTFLDYEGLIRVVLHQ 999

Query: 322  KFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFFSLLFREVNCQ 468
            +F + +++D    IPA+  G   I+EM     E    FF+++F    C+
Sbjct: 1000 RFPLRQVRDLVEGIPALFAGNGLILEMLTLP-EQQRRFFAVVFAAEICR 1047


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
 Frame = +1

Query: 130  DQTQNVVTDIITQHIDLITLVENMEG----------ILTNKEPESREKGMRFFTKILTEL 279
            D+T     +++   IDL+ LV + EG          I+ N++ +  E      + IL EL
Sbjct: 808  DETVERRVEVMRNVIDLVRLVRDREGLAVKYPLKEMIVINRDSQFLEDVKSLESYILLEL 867

Query: 280  PRDYLTVSQVKFISKFYID-RLKDNHRVIPAVLQGFSAIIE--MKNYDMETSGEFFSL 444
                LTVSQ K   K+ I  + + N +++ A L+G    +   +KN   E+  E F L
Sbjct: 868  NVRKLTVSQDK--QKYGITLKAEPNFKILGARLKGEQKKVADYLKNQITESELEKFLL 923


>Z72503-3|CAE17724.1|  217|Caenorhabditis elegans Hypothetical
           protein C26C6.9 protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 174 YMLSYYISNYILRLIKYFIVIYYFLRKFRLEPNRI 70
           ++ +Y I   I+ +I     +YY  + FR++PNRI
Sbjct: 181 FIQNYNIVFCIVAIIITISQVYYVRKLFRIDPNRI 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,220
Number of Sequences: 27780
Number of extensions: 193163
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)