Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c23
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.7  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 135 NAKCSY*YNNSTYRPNNFS*K 197
           N    Y YNN+ Y  NN++ K
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKK 111


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 135 NAKCSY*YNNSTYRPNNFS*K 197
           N    Y YNN+ Y  NN++ K
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKK 111


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 132 SNAKCSY*YNNSTYRPNNFS 191
           +N    Y YNN+ Y  NN++
Sbjct: 325 NNNNYKYNYNNNNYNNNNYN 344


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 199 MEGILTNKEPESREKGMRFFTKILTELPRDYLTVSQVKFISKFYIDRL 342
           M  +   +  +S  +      KI+  LP D L+  Q   ++  YID L
Sbjct: 257 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFL 304


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 379 GFSAIIEMKNYDMETS 426
           GFS ++  KNYD  T+
Sbjct: 28  GFSYLLNCKNYDHPTT 43


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 156 YNNSTYRPNNFS*KHGGYFN 215
           +NN+ Y  NN++  +  Y N
Sbjct: 324 HNNNNYNNNNYNNNYNNYNN 343


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 208 ILTNKEPESREKGMRFFTKILTELPRD 288
           IL+NK PE  +       KI  E+ RD
Sbjct: 101 ILSNKGPEGIQINATELQKIKLEIHRD 127


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 208 ILTNKEPESREKGMRFFTKILTELPRD 288
           IL+NK PE  +       KI  E+ RD
Sbjct: 101 ILSNKGPEGIQINATELQKIKLEIHRD 127


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 247 MRFFTKILTELPRDYLTVSQVKFISKFY 330
           +R F KI   L  DY +      +  FY
Sbjct: 77  LRLFDKIRVFLDEDYSSAEHFTALGNFY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,311
Number of Sequences: 438
Number of extensions: 2412
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)