Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c22
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.1
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 25 4.2
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 25 5.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 5.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 5.5
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 24 9.6
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 24 9.6
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 24 9.6
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 295 KQASQRAALEESTPLAPLKEIEEDDNEQKIGAELRSELRTVTRDTDSGNETL 450
K+ AA STP+ + +E+ EQ I E V +D D +E L
Sbjct: 64 KKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEPL 115
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 3.1
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +1
Query: 202 VYKKLQEKEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPLAPLKEIEEDDNEQK 381
V +LQE FS K +EVD+ + + F S S +++L + LK D + +
Sbjct: 187 VGNRLQEYISFSHPKEREVDEEYIQNFSS---DPSLKSSLND------LKRYISDSSSEL 237
Query: 382 IGAELRSELRTVTRDT 429
L SE TV T
Sbjct: 238 ADVVLSSESPTVQAAT 253
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 250 QEVDDSFFEKFGSILKQASQRAALEESTPLAPLKEIEEDDN 372
Q +DD + E FGS K++ Q+A S P + + EE+ N
Sbjct: 303 QFLDDGYRECFGSSFKESLQQALC--SAPTSSIAYHEEEIN 341
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 5.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 75 IVENIYSFILHLAFGQRGFYFAKDIRMFREY 167
+V + + ++ QRG Y A+D ++ R+Y
Sbjct: 18 LVSEFFEYAVNSILFQRGIYPAEDFKVVRKY 48
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 220 EKEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPLAPLKEIEEDDNEQKIGAEL 396
E ++ R + V ++ + + +Q L+ STP++ +K +DD E+K ++L
Sbjct: 415 ENKLHDRYTLFPVPVDVYDNQPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESDL 473
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 5.5
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 274 EKFGSILKQASQRAALEESTPLAPLKEIEEDDNEQKIGAELRSEL 408
EK LK + + LEE T LA E DN+QK+ +LR EL
Sbjct: 634 EKLNESLK--TSKTNLEEQTQLAEKYHEELLDNQQKL-YDLRIEL 675
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 127 VSILLKIFVCFVNMQKKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKFGSIL 294
+S + K+F+C + + +R +VY+ L+E E R + D+ KFG ++
Sbjct: 601 LSFMQKVFLCAIVNRMRRSGFAESYVYEVLEEAERLLR--VMTTPDA-EAKFGELI 653
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 124 EVSILLKIFVCFVNMQKKRLDDPWMFVYKKLQEK 225
E+ I L+ N K++L W F K+L+EK
Sbjct: 27 EIRIALQELGLSTNGNKEKLKRRWKFREKRLEEK 60
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 24.2 bits (50), Expect = 9.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 223 KEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPLAPLKEIEEDDNEQKIGAELRS 402
K IFS + D + + F + S + A + T PLKE E+D+ + + + S
Sbjct: 307 KPIFSDEDEDDDDLTASQPFSKGICNDSMQVAKKNFTEEIPLKEDEKDNELEHLVSPATS 366
Query: 403 ELRTVT 420
TV+
Sbjct: 367 VHTTVS 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,738
Number of Sequences: 5004
Number of extensions: 31027
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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