Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c22
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 1.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 1.8
09_02_0626 + 11352690-11353078,11353106-11354006 28 3.1
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557... 28 4.1
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041... 28 4.1
11_04_0232 + 15163347-15163952 27 7.2
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 7.2
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338... 27 7.2
03_05_0631 - 26262247-26262287,26262612-26262686,26262768-262628... 27 7.2
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 27 9.5
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 220 EKEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPLAPLKEIEEDDNEQKIGAE 393
++ I RRKI E+ DS IL A L E++ + E DD Q++GAE
Sbjct: 949 DEAIMKRRKIGEIMDSS----PKILPVKDNDAVLPENSTASSSHETSVDDTWQELGAE 1002
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 130 SILLKIFVCFVNMQ-KKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKFGSILKQAS 306
S + +F ++ M K+R++DP KLQ++ R + D+ F F + Q
Sbjct: 39 SSIADLFTLYLGMNSKQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFP 98
Query: 307 QRAALEEST 333
+ L+ T
Sbjct: 99 DQEQLQAVT 107
>09_02_0626 + 11352690-11353078,11353106-11354006
Length = 429
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/100 (23%), Positives = 44/100 (44%)
Frame = +1
Query: 121 NEVSILLKIFVCFVNMQKKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKFGSILKQ 300
+E L+ + + +++ LDD + +QE E RR+I+ +D S E+ +Q
Sbjct: 58 SEADASLRAWTAALEAERRALDDR----ARSVQEFEAMIRRRIEVLDRSQREQNTRGQEQ 113
Query: 301 ASQRAALEESTPLAPLKEIEEDDNEQKIGAELRSELRTVT 420
+ LEE L + E + ++ E +E +T
Sbjct: 114 TQRAQELEERARLLDQRTAAEAEASLRLREEAAAERDRIT 153
>10_02_0128 +
5567202-5568107,5568587-5568968,5570356-5570423,
5570899-5571034,5571206-5571283,5571623-5571747
Length = 564
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 208 KKLQEKEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPL 339
+KL +FSRRK+ E+ E G +L++ ++RA P+
Sbjct: 128 RKLGAAHLFSRRKLAELAPLRDEIVGGLLRRVAERADHRGGAPV 171
>04_03_1037 -
21901989-21902468,21903308-21903526,21903984-21904106,
21904225-21904392
Length = 329
Score = 27.9 bits (59), Expect = 4.1
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +1
Query: 148 FVCFVNMQKKRLDDPWMFVYKKLQ---EKEIFSRRKIQEVDDSFFEKFGSILKQASQRAA 318
FV +K + W+ K+ Q EKE +++K ++ D +F ++ A
Sbjct: 140 FVTSAYRKKLEEERKWLEEEKRRQLQEEKEDVTKKK--DLSDFYFGLSKNVAFGAQTHDN 197
Query: 319 LEESTPLAPLKEIEEDDNEQKIGAELRSELRTVTRDTDSGNET 447
+ + P L E +D K+GAE+ RD+ G ET
Sbjct: 198 TKHAKP-EKLDEKVQDAKTSKVGAEVSDRSPKHKRDSGEGAET 239
>11_04_0232 + 15163347-15163952
Length = 201
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 253 EVDDSFFEKFGSILKQASQRAA-LEESTPLAPLKEIEEDDNEQKIGAELRSE-LRTV 417
+ + FE +GS + Q++A + S+P+ PLKEI + +Q++ +R E LR V
Sbjct: 72 QFEGDLFEDYGSPSNYSCQKSAPVLRSSPM-PLKEILFKEMQQELTTIMRDEWLREV 127
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 211 KLQEKEIFSRRKIQEVDDSFFEKFG--SILKQASQRAALEESTPLAPLKEIEEDDNEQ 378
+L+E+E +S E+D S F + G S+L + S+ A ++ L L+ + +N +
Sbjct: 475 ELEEREGYSEEMEYEMDSSTFAEVGSRSVLTRGSKAPACKKLDALQNLETAQNGNNPE 532
>08_01_0381 -
3382316-3382459,3382872-3382907,3383323-3383429,
3383518-3383587,3383839-3384663,3384748-3385044,
3385175-3385501,3385760-3386046,3386728-3386896
Length = 753
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 307 QRAALEESTPLAPLKEIEEDDNEQKIGAELRSELRTVTRDTDSGN 441
Q +AL E TPL P ++D GAE +L D+++ N
Sbjct: 383 QLSALYEDTPLLPYDSTDQDVLSMDSGAESLQDLFNSMDDSNARN 427
>03_05_0631 -
26262247-26262287,26262612-26262686,26262768-26262843,
26263115-26263156,26263226-26263334,26263660-26263664
Length = 115
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 172 KKRLDDPWMFVYKKLQEKEIFSRRKIQEV 258
+KR +PW+ V K+++ +E RRK ++
Sbjct: 20 RKRESEPWLEVGKRVKTEEASKRRKKDDI 48
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 160 VNMQKKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKFGSILKQA 303
VN+ K + F YKK Q+ E RR E D ++E G + A
Sbjct: 185 VNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDA 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,454
Number of Sequences: 37544
Number of extensions: 168122
Number of successful extensions: 475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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