Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c22
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    32   0.17 
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    32   0.23 
AL021472-2|CAA16298.1|  249|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF067613-6|AAY86235.1|  126|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 121 NEVSILLKIFVCFVNMQKKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKFG 285
           NEV+   ++ V   N + +RLD      ++K++E +I S  +IQ V+DS FE  G
Sbjct: 139 NEVTFESEMKVILRNNKVRRLDKHSFRSFRKIRELDI-SYNQIQTVEDSSFETVG 192


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +1

Query: 145  IFVCFVNMQKKRLDDPWMFVYKKLQEKEIFSRRKIQEVDDSFFEKF--GSILKQASQRAA 318
            +F+ +   ++KR ++      K+ +EK I  R++I+EV++    +      ++Q + +  
Sbjct: 885  VFIWYRKREEKRKEEEAEEERKREEEKLIAERKRIEEVEEQRKREAEDKEKIEQLNAKVR 944

Query: 319  LEESTPLAPLKEIEEDDNEQK 381
             +E    A  K+ E+DD E+K
Sbjct: 945  EKEERSEARRKQKEKDDEEEK 965


>AL021472-2|CAA16298.1|  249|Caenorhabditis elegans Hypothetical
           protein Y17D7B.2 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166 MQKKRLDDPWMFVY-KKLQEKEIFSRRKIQEVDDSFFEKFGSILKQASQRAALEESTPLA 342
           + KK +D P+   + +K ++KEI    K  EV D   E F     + S+   L   TP  
Sbjct: 158 ISKKNMDSPYTSGWIRKRRQKEIRKYLKFYEVIDFLDENFEEFGHEFSENNELFAETPRQ 217

Query: 343 PLKEIEE 363
              ++E+
Sbjct: 218 KWYKLED 224


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 223 KEIFSRRKIQEVDDS--FFEKFGSILKQASQRAALEESTPLAPLKEIEED 366
           +++ SRR  +E  D     ++FG  +K+  Q+A L+ ++ +    EIE+D
Sbjct: 467 EQVESRRGAEEDYDEQEMMKEFGKFVKEELQQAELKSTSEMLQKLEIEKD 516


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 295 KQASQRAALEESTPLAPLKEIEEDDNEQKIGAELRSELRTVTRDTD 432
           ++A+ RAA E     AP+ E ++D+ +++ G +   ++R    DTD
Sbjct: 672 EEAAARAAQELD---APIPEGDDDEEKEEAGKDAEEKVREGDSDTD 714


>AF067613-6|AAY86235.1|  126|Caenorhabditis elegans Hypothetical
           protein F56D6.11 protein.
          Length = 126

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 208 KKLQEKEIFSRRKIQEVDDSFFEKFGSILKQASQRA 315
           KK  E + F  +  +E+DDSF +    +L   ++RA
Sbjct: 18  KKAAEMDAFHNKSSKEMDDSFKKNSNKMLDDHNKRA 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,094,777
Number of Sequences: 27780
Number of extensions: 171414
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)