Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c21
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    31   0.083
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    29   0.19 
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   1.8  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.1  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   7.2  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 272 SLKRYLRAFH-TVDNAFQAILKTNKWRVEYGVADLPNN 382
           +L R+LRA    +  + +  +K  KWR E+GV DL  N
Sbjct: 52  TLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKN 89


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 176  ELKPVNEEDLKQLKERMNLIASADPAQYHNSYSLKRYLRAFHTVDNAFQAILKTNK 343
            E + + EED K+  E     ASAD    H+  +L+  + A H + N   A    NK
Sbjct: 1059 ERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNK 1114


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 263 NSYSLKRYLRAF-HTVDNAFQAILKTNKWRVEYGV 364
           +S SL  YL    +++D + Q   K N WRV +GV
Sbjct: 97  SSASLAAYLNTLSYSLDKSQQWFGKGNAWRVSHGV 131


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 281 RYLRA--FHTVDNAFQAILKTNKWRVEYGVADL 373
           RYLRA  +H V NA + I+ T  WR  +GV ++
Sbjct: 640 RYLRATKWH-VSNAKKRIVDTLVWRRHFGVNNM 671


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 328 DRLECIVDRMECTQISFERITVMILSWV 245
           DR+  I  +ME  Q+  E++ +++  W+
Sbjct: 103 DRITLIQGKMEEIQLPVEKVDIIVSEWM 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,500
Number of Sequences: 5004
Number of extensions: 20323
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)