Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c21
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33...    31   0.32 
01_07_0035 + 40637102-40637197,40638594-40638948,40639664-406397...    29   0.99 
05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015     28   2.3  
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516...    27   4.0  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    26   9.2  
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560...    26   9.2  

>05_01_0049 -
           337132-337488,337613-337765,337924-338551,338617-338852,
           339563-339577
          Length = 462

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 278 KRYLRAFHTVDNAFQAILKTNKWRVEYGVADLPN 379
           +R++  F    NAF+ +   + W + +G +D+PN
Sbjct: 144 RRFMSFFQAYPNAFRRLTSLSLWALRFGDSDIPN 177


>01_07_0035 +
           40637102-40637197,40638594-40638948,40639664-40639700,
           40639850-40639955,40640086-40640196,40640334-40640468
          Length = 279

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 197 EDLKQLKERMNLIASADPAQYHNSYSLKRYLRAF-HTVDNAFQAILKTNKWRVE 355
           E LK  + R  + A    A+  ++ +L+R+LRA  H V+ A   +LK  +WR E
Sbjct: 13  EWLKVAELRATVEAQDPHAKEVDNLTLRRFLRARDHNVEKASAMLLKALRWRRE 66


>05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015
          Length = 500

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 299 HTVDNAFQAILKTNKWRVEYGVADLPNN 382
           + V+N   A ++T  W +E+G+A+L N+
Sbjct: 294 YIVENINVAAIETTLWSIEWGIAELVNH 321


>09_04_0076 +
           14350020-14350164,14351020-14351129,14351436-14351601,
           14351740-14351840,14351960-14352032,14352111-14352252,
           14353239-14353399,14354017-14354129,14354226-14354325,
           14354580-14354676,14354798-14354849,14355074-14355175,
           14355256-14355402,14355485-14355656,14355752-14355991,
           14356565-14356621,14356853-14356942,14357089-14357284,
           14358117-14358228,14358305-14358459,14359155-14360580,
           14360663-14360857,14361214-14361684
          Length = 1540

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 YSQCRPSSVS*QLFSQKIFACIPYGR 309
           Y QC P+S   Q F +  +ACI YG+
Sbjct: 822 YPQCPPTSHLFQRFRELGYACIKYGQ 847


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 206  KQLKERMNLIASADPAQYHNSYSLKRYLRAF-HTVDNAFQAILKTNKWRVEYGVADL 373
            K  K ++ + +  +     +S   KR  +A  H VD +F+ I   NK+  E  +++L
Sbjct: 1710 KSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSEL 1766


>01_07_0014 -
           40455673-40455723,40455815-40455892,40455987-40456049,
           40456250-40456390,40456851-40456949,40457403-40457477,
           40457556-40457652,40457738-40457805,40458456-40458512,
           40458613-40458671,40458798-40458921,40459208-40459264,
           40459378-40459457,40459585-40459793,40459868-40459986
          Length = 458

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 167 MAEELKPVNEEDLKQLKERMNLIASADPAQYHNSYSLKRYLR 292
           +A+ELK +N ++  + +E + + +S     Y+ S  L  YL+
Sbjct: 92  VADELKELNMDNYDEEEEGLEIFSSGQGDLYYASNDLDPYLK 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,180
Number of Sequences: 37544
Number of extensions: 110539
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)