Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c21
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    33   0.054
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    33   0.054
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    28   2.7  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    27   3.6  
AC006662-2|AAL06035.1|  535|Caenorhabditis elegans Hypothetical ...    26   8.2  
AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical ...    26   8.2  

>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.054
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 185 PVNEEDLKQLKERMNLI---ASADPAQYHNSYSLKRYLRAFHTVDNAFQAIL 331
           P+  E++K  K+ +NL     S+DPA   N Y L   ++ F T  NA    L
Sbjct: 280 PILREEMKLRKKTLNLFLNNGSSDPAHGVNKYFLSSLMKVFKTAHNALPTAL 331


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.054
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 185 PVNEEDLKQLKERMNLI---ASADPAQYHNSYSLKRYLRAFHTVDNAFQAIL 331
           P+  E++K  K+ +NL     S+DPA   N Y L   ++ F T  NA    L
Sbjct: 280 PILREEMKLRKKTLNLFLNNGSSDPAHGVNKYFLSSLMKVFKTAHNALPTAL 331


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 96  YHLSQLCFNFNTYAVF--YPSFKITYLLMNYYQV 1
           YH+S  C NF+ Y +F  Y +  I  LL++ + +
Sbjct: 156 YHVSNSCVNFSFYGIFCKYLTIIILILLIDLFSI 189


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 96  YHLSQLCFNFNTYAVFYPSFKITYLLM 16
           YH+S  C +F+ YA+F     I ++++
Sbjct: 156 YHVSNQCVSFSFYAIFCKYISIIFIIV 182


>AC006662-2|AAL06035.1|  535|Caenorhabditis elegans Hypothetical
           protein H23L24.3a protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 251 AQYHNSYSLKRYLRAFHTVDNAFQAILKTNKW 346
           A Y NS+ L  +L  FH      QA+ KT  W
Sbjct: 43  AFYPNSWFLPAHLADFHAFYRKAQALGKTEMW 74


>AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical
           protein H23L24.3b protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 251 AQYHNSYSLKRYLRAFHTVDNAFQAILKTNKW 346
           A Y NS+ L  +L  FH      QA+ KT  W
Sbjct: 215 AFYPNSWFLPAHLADFHAFYRKAQALGKTEMW 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,154,862
Number of Sequences: 27780
Number of extensions: 111572
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)