Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c21
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   0.54 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   0.54 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   0.94 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.0  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 386 LYYWVNQQLHILLSTY 339
           +Y W NQ LHIL ++Y
Sbjct: 93  IYKWNNQILHILWTSY 108


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 386 LYYWVNQQLHILLSTY 339
           +Y W NQ LHIL ++Y
Sbjct: 76  IYKWNNQILHILWTSY 91


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 138 LVNYSCFSLCAC**YHLSQ 82
           L NYSCF  CA    H+ Q
Sbjct: 72  LTNYSCFITCALEKSHIIQ 90


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 271 ITVMILSWVCTGYKIHTFFQLL*VFFI 191
           +TV+I++W   G + H   QL+   F+
Sbjct: 313 VTVIIINWNFRGPRTHRMPQLIRKIFL 339


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 203 LKQLKERMNLIASADPAQYHNSYSLK 280
           L +L    N IAS DP  + N   LK
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLK 434


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 333 LRIAWNALSTVWNARKY 283
           L++ WN ++  WN   Y
Sbjct: 76  LKLEWNDVNMRWNVSDY 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,883
Number of Sequences: 438
Number of extensions: 1519
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)