Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c20
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   1.8  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    24   2.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   3.2  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    23   5.6  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    23   7.3  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 83  PISLPFHHSISLFFKDIASAYAIEY 9
           PI     HSIS FF+ + S    EY
Sbjct: 350 PIQFHLPHSISSFFRGVGSGVMGEY 374


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 121 FHLIYIIFISYHGPFHCLSIILFHF 47
           F L+Y   I  H  FH   +I FHF
Sbjct: 157 FFLLYHQIILSHSLFHISHLISFHF 181


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 71  PFHHSISLFFKDIASA 24
           PFHH    F KD+ SA
Sbjct: 331 PFHHKEQQFLKDLLSA 346


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 97  ISYHGPFHCLSIILFHFFLKTSHPPML 17
           +S+H P H L + L  F+++  +  +L
Sbjct: 705 VSFHHPLHWLLVYLLSFYVERDNYKLL 731


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 53  SLFFKDIASAYAIEYRN 3
           SLF  DI + Y I Y+N
Sbjct: 464 SLFLDDIKALYVINYQN 480


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 SNLYYIYFIPRPISLPFH 63
           S +YY Y  P+P   PFH
Sbjct: 451 SPMYYNYNYPQPSFPPFH 468


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 127 FFFHL-IYIIFISYHGPFHCLSIILFHFFLKTSHPPM 20
           FFF+L I +  + +  P   L I+L   FL    PP+
Sbjct: 259 FFFYLPIVMSILIFCLPTQALFIVLSSVFLAWHSPPL 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,525
Number of Sequences: 5004
Number of extensions: 5535
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)