Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c16
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    23   9.2  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   9.2  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 59  YFNRFTVRLPCTSVRQIRN 3
           +F   T RLPC+ + +I+N
Sbjct: 145 FFPDVTKRLPCSCLSEIKN 163


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 74  FEDDKYFNRFTVRLPCTSV 18
           FED +Y  RFT+R   T+V
Sbjct: 634 FEDYQYMGRFTLRDQGTTV 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,399
Number of Sequences: 5004
Number of extensions: 8054
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)