Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c14
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    46   3e-06
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    40   1e-04
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    35   0.006
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   0.48 
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    28   0.63 
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   1.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   2.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.4  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   5.9  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   5.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.8  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 183 TSPQDTKVRVQGAQGEFLNFCANNYLGLS-NHPEVVEAAREGLKKYGAGLSSVRFICGTQ 359
           ++  ++  ++ G     LN  + NYLG + +H        E ++KYG    S   ICGT 
Sbjct: 173 STDSNSTFKLTGDTSLALNVSSYNYLGFAQSHGPCATKVEEAMQKYGLSTCSSNAICGTY 232

Query: 360 SIHKELENRLSQFHG 404
            +HKE+E   + F G
Sbjct: 233 GLHKEVEELTANFVG 247


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 240 FCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 401
           +C+N+YL +  H ++ EA  + ++ YG G    R I G       LE  L+  H
Sbjct: 179 WCSNDYLNMGGHKKIREAMHQCIETYGGGAGGTRNIAGHNQHAVRLEKSLADLH 232


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 237 NFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
           NF + N+L L+ +  + E A   L++ G G        GTQ  H  LE  ++ F G
Sbjct: 131 NFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIG 186


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 VAKLRDVLEDRLQEIKR-AKTWKHERVLTSPQDTKVRVQGAQGE 230
           + K  ++L+   + ++R  K W H RVLT   D + RV+  + E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
 Frame = +3

Query: 81   KRQERAGVAKLRDVLEDR---LQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCAN 251
            KR  R  +    DVLE R   +  + R   WK   V T  +   +       E L     
Sbjct: 1007 KRLMREHLGLETDVLEQREYNMDGLDRDTEWKRVEVWTPDEGNAINGSAYTAEELKMKYR 1066

Query: 252  NYLGLSNHPEVVEAAREGLKKYGAGL----SSVRFICGTQSIHKELE 380
            +    +  P+++  A + +KK    +    SS+ F   TQ    E E
Sbjct: 1067 SQSQFTTTPDILRKAEKSMKKLDQRVSLIPSSIEFNIKTQKDKVEFE 1113


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 138 QEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFC 245
           QE++  K  K  R+ T P+    R++G   E+ NFC
Sbjct: 221 QEMEAMKMLKPLRI-TQPEGVNFRIKGRYIEWQNFC 255


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 LGNMRGCSHRRKTLRCGSKVLKENS*TSVPTT 255
           L N++     R   RCGSKVLK  +  ++P T
Sbjct: 88  LENLQLSQVNRIKSRCGSKVLKSTTKFTIPKT 119


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 78   VKRQERAGVAKLRDVLEDRLQE 143
            V +  RAGV K +D++ +RLQE
Sbjct: 1253 VVQGSRAGVVKAKDLIFERLQE 1274


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = +3

Query: 123 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHPEVVEAARE 302
           L +R+ E     T K    L +P+ T   +    G+      ++  G   +   +E AR+
Sbjct: 8   LLNRVNESAIVNTLKEYTGLNTPKWTFNDIPDLTGKVALVTGSS--GGIGYVTALELARK 65

Query: 303 GLKKYGAGLSSVRFICGTQSIHKELENRLSQF 398
           G K Y AG +  ++    + IH E+ +   +F
Sbjct: 66  GAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRF 97


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 54  TQVRHLHEVKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVR 209
           T    +HE+ R    G+  L+D      Q +K+    K E+   S   TK++
Sbjct: 5   TDADEIHEILRNSTTGLVHLKD-----YQRVKQNIVEKREKHALSTTSTKIK 51


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 190 GDVSTLSCFQVLALLISCKRSSNTSRSLATPALSCLFTS 74
           G  STL+   +   + S   +S+TS S ATP+ S   +S
Sbjct: 119 GSDSTLAASTISGGIYSSTSASSTSSSTATPSSSSTTSS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,654
Number of Sequences: 5004
Number of extensions: 26769
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)