Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c14
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 47 5e-06
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 47 5e-06
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 47 5e-06
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 38 0.002
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 38 0.003
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 38 0.003
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 36 0.012
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 35 0.028
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 1.8
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875... 28 2.4
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 3.2
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 3.2
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 27 4.3
01_06_0584 - 30407012-30408531,30408625-30408955 27 4.3
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 26 9.9
04_03_0509 - 16653153-16653318,16653518-16653650,16653720-166538... 26 9.9
03_05_0122 - 21025469-21026719 26 9.9
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 26 9.9
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 26 9.9
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 240 FCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQ 395
F N+Y+GLS+HP + AA + ++YG G ICG + HK +E L++
Sbjct: 83 FSGNDYMGLSSHPAIRHAAVKAAEEYGMGPRGSALICGYTTYHKMVEESLAE 134
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 228 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
E +NF + NYLGL + +++++ L+KYG G R GT +H + E ++++F G
Sbjct: 112 EVINFASANYLGLIGNEKIIDSCVGSLEKYGVGSCGPRGFYGTIDVHLDCEAKIAKFLG 170
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 240 FCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQ 395
F N+Y+GLS+HP + +AA + ++YG G ICG + HK +E L++
Sbjct: 83 FSGNDYMGLSSHPAIRKAAVKAAQEYGMGPRGSALICGYTTYHKLVEESLAE 134
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 234 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
LN + NYLG + E E LKKY SVR GT +H ELE +++F G
Sbjct: 103 LNLGSYNYLGFAAADEYCTPLVIESLKKYSPSTCSVRVDGGTTKLHTELEELVARFVG 160
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 234 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
LN + NYLG + E E LKKY A SVR G +H ELE +++F G
Sbjct: 118 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSVRVDGGNTKLHVELEELVARFVG 175
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 234 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
LN + NYLG + E E LKKY A SVR G +H ELE +++F G
Sbjct: 111 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSVRVDGGNTKLHVELEELVARFVG 168
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 35.9 bits (79), Expect = 0.012
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 228 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGT 356
E +NF + NYLGL + +++++ ++KYG G R GT
Sbjct: 112 EVVNFASANYLGLIGNEKIIDSCVGSVEKYGVGSCGPRSFYGT 154
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 34.7 bits (76), Expect = 0.028
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 234 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQF 398
LN + NYLG + E E LKKY A S R G +H ELE +++F
Sbjct: 114 LNLASFNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGNTQLHIELEELVARF 169
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 57 QVRHLHEVKRQERAGVAKLRDVLEDR 134
+VRHL V+R E A A LRD++E R
Sbjct: 956 EVRHLENVERLEDARKANLRDMVELR 981
>05_06_0164 +
26085766-26085799,26086908-26087030,26087406-26087525,
26087632-26087696
Length = 113
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 99 GVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVR 209
G A +++ +++K+ K WKH + +T Q +K+R
Sbjct: 2 GCAGSTPKVDENSKKLKKPKPWKHTQAITPTQLSKMR 38
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 108 KLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKV 206
K+RD +E+ + ++ A+ W+ ERV D K+
Sbjct: 340 KMRDEVEEEKKMLQMAEVWREERVQMKLVDAKL 372
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.9 bits (59), Expect = 3.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 198 TKVRVQGAQGEFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRF---ICGTQSIH 368
TKVRV+G Q + A + HP A+R L++ S + +CG
Sbjct: 519 TKVRVKGPQCSSASHAARRHARGMGHPVKKAASRSCLQRPSVSRDSQQMPESVCGPPG-- 576
Query: 369 KELENRLSQFHG 404
K L N S HG
Sbjct: 577 KMLSNASSIIHG 588
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 193 CGDVSTLSCFQVLALLISCKRSSNTSRSLATPALS 89
C + C Q+ +LISC+ S +S + P L+
Sbjct: 253 CNTMVLKQCLQIWGILISCRYSFPSSEKIRWPVLA 287
>01_06_0584 - 30407012-30408531,30408625-30408955
Length = 616
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 249 NNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGT 356
++Y+GL EAA+ + GAG V CGT
Sbjct: 117 DSYVGLHTSKLASEAAKYVKRSLGAGAEDVLLFCGT 152
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 135 LQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHPE 281
++E K+A + +V + P +V Q QG +L C N HPE
Sbjct: 426 IEEFKKALSHVDSQVKSIPATAQVAAQ--QGHYLAECFNKMDQCKEHPE 472
>04_03_0509 -
16653153-16653318,16653518-16653650,16653720-16653882,
16654488-16654595,16654986-16655100,16655581-16656083
Length = 395
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 3 FVAMALRSQLLRNVLNGTQVRHLHEVKRQERAGVAKLRDVLEDRLQEIKRA 155
F + R +LL + + R + K+ +R LRD++++ ++EIK+A
Sbjct: 208 FGRVKTREELLAEERDYKRRRTSYRGKKAKRNPKEILRDIIDEHMEEIKQA 258
>03_05_0122 - 21025469-21026719
Length = 416
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 218 TLDPHLSVLRRCEHPLMFP----SLSPLDFLQAVL*HISELSYTSSFLPLH 78
+L PHL +LRR HP P + +P D L +V S S ++ + +H
Sbjct: 19 SLHPHLPLLRRHRHPSSRPISVSAAAPSDLLASVESVASAASVLAAIVLVH 69
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/88 (20%), Positives = 40/88 (45%)
Frame = +3
Query: 69 LHEVKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCA 248
LH K QER + +R+ + + I+++ +++ P + ++ A + N A
Sbjct: 546 LHSQKDQERKALIDIRNTADTTIYSIEKSLGEYRDKI---PAEVASEIETAIADLRNEMA 602
Query: 249 NNYLGLSNHPEVVEAAREGLKKYGAGLS 332
++ + +EAA + + K G +S
Sbjct: 603 SD--DIEKIKSKIEAANKAVSKIGQHMS 628
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 48 NGTQVRHLHEVKRQERAGVAKLRDVLEDRLQEIKRAKTWKHE 173
+GTQ + L + Q ++G+ +L+D L I RA+ HE
Sbjct: 35 SGTQDQKLQDEVLQLQSGLQRLKDTLPAMYDLIDRAEWRSHE 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,801
Number of Sequences: 37544
Number of extensions: 179028
Number of successful extensions: 575
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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