Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c14
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...   120   3e-28
U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...    42   2e-04
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...    42   2e-04
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    40   7e-04
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    29   1.3  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    29   1.3  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   2.9  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    27   3.9  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical...    27   6.8  
AC006629-4|AAK18927.1|  197|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical ...    26   9.0  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score =  120 bits (290), Expect = 3e-28
 Identities = 55/94 (58%), Positives = 71/94 (75%)
 Frame = +3

Query: 123 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHPEVVEAARE 302
           L++ L  IK A T+K ERV+   Q   V+V G+    +NFCANNYLGLS+HPEV+ A ++
Sbjct: 33  LKNELAGIKNAGTFKTERVIQGRQGVLVKVTGSDKPVINFCANNYLGLSSHPEVIAAGQK 92

Query: 303 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
            L+ +GAGLSSVRFICGTQ IHKELE +++QFHG
Sbjct: 93  ALETHGAGLSSVRFICGTQDIHKELEQKIAQFHG 126


>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 228 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
           ++LN  + N+L       + + A++ + KYG G    R   GT  +H +LE  L++F G
Sbjct: 63  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMG 121


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 228 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHG 404
           ++LN  + N+L       + + A++ + KYG G    R   GT  +H +LE  L++F G
Sbjct: 87  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMG 145


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 GAQGEFLNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLS 392
           G + E +N  + NYLG S+   V  EAA   + KYG      R   G    HK +E+ ++
Sbjct: 131 GTESEVINLGSYNYLGFSHRSGVCAEAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTIA 190

Query: 393 QF 398
           Q+
Sbjct: 191 QY 192


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 401
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 336 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 368


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 401
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 406 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 438


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 401
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 337 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 369


>Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical
           protein C54C8.6 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   IRRHGSALAATTQRTEWHSSSSFTRSEEARKSW 100
           I +HG ++   T ++ WHS ++  RS  + K W
Sbjct: 93  ITQHGISVQFFTSQSNWHSITNNNRSFSSYKLW 125


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171 ERVLTSPQDTKVRVQGAQGEFLN-FCANNY 257
           +R + SP++ +  +  A+GEF+N FC  +Y
Sbjct: 859 DRAVLSPEEEQASMYNAEGEFVNPFCRLSY 888


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 81  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 215
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 423 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 466


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 81  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 215
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 757 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 800


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 33  LRNVLNG-TQVRHLHE-VKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKV 206
           L+NV+N  T+ R ++E + +Q+   +  ++  LE  +   K+     +E VLTSP+  K 
Sbjct: 193 LKNVVNEYTETRQINEELDKQKEEAILHIQ-ALEKEMLTGKKTIEHLNEEVLTSPEQLKQ 251

Query: 207 RVQ 215
            ++
Sbjct: 252 EME 254


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 317 WRRLELSEIYLRYSKYTQGAREPPVSVP 400
           W    +SE+Y RYS++ +GA    + VP
Sbjct: 293 WDLYAVSEVYERYSQFRRGAVWAKILVP 320


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 205 TLVSCGDVSTLSCFQVLALLISCKRSSNTSRSLATPA 95
           TLV C   ST SC QVL L ++  R     R+   P+
Sbjct: 96  TLVKCITSSTTSCAQVLPLAVAIYRYFIVVRNKKMPS 132


>AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical
           protein K11D12.9 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 57  QVRHLHEVKRQERAGVAKLRDVLEDRLQEIKRAK----TWKHERVLTSPQDTKVRVQ 215
           ++ HL   K Q  + V +L+ +LED  Q++K  K        ERV T+    K+ +Q
Sbjct: 141 RINHLENEKEQCLSEVQELKRLLEDSEQDLKDCKDEMNRLMEERVETADALDKLTIQ 197


>AC006629-4|AAK18927.1|  197|Caenorhabditis elegans Hypothetical
           protein F12E12.3 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 126 EDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFC 245
           +D+ QE    K+WKH+  +   Q T   +   QG     C
Sbjct: 61  KDKHQEAMNYKSWKHQLDIVIAQQTLDNLLATQGRSSKSC 100


>AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical
           protein T09H2.1 protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 264 LSNHPEVVEAAREGLKKYGAGLSSV 338
           L NHPEVV+ ARE L     G  S+
Sbjct: 324 LLNHPEVVKIAREELVHLTGGHRSI 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,208
Number of Sequences: 27780
Number of extensions: 145809
Number of successful extensions: 435
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)