Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c10
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 30 0.18
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 28 0.71
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 5.0
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 6.6
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 6.6
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 25 6.6
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 25 6.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.6
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 8.7
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 30.3 bits (65), Expect = 0.18
Identities = 40/150 (26%), Positives = 67/150 (44%)
Frame = +1
Query: 16 CVMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKMNPFNVPKTGLDRRSSAIVVRQEIE 195
C +CN S ++ E + K GE TE AL V +++ FN K L +++ V +
Sbjct: 444 CALCNLSTVNQTETGEWVVK-GEPTEIALHVFSKR---FNYGKEDL-LKTNTFVREYPFD 498
Query: 196 TKWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCTHARVGTSKVP 375
++ K+ + D++ T ++ KGA E +LERC+ + T + P
Sbjct: 499 SEIKRMAVIY--EDQQGQYT---------------VYAKGAVERILERCSTSNGSTLEEP 541
Query: 376 LTTTLKNRILDLTRQYGTGRDTLRCLALAT 465
+R L + + + LR LALAT
Sbjct: 542 ------DRELIIAQMETLAAEGLRVLALAT 565
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 28.3 bits (60), Expect = 0.71
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 182 VKKLRPSGRKNSLSSSLVTGNLCRHTAHPSNPR--ASATDPNYLSREHPKVYSNVAHTL 352
V++L S K+ L SS N + HP+ R +S T P+Y +R H ++++H L
Sbjct: 135 VQRLPASAPKHDLYSS---ANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHRL 190
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 181 RQEIETKWKKEF----TLEF-SRDRKSMSTYCTPLKPSRLGNGPKLFVK 312
R+E+ETKW + EF DR+ + + L PS LG P + VK
Sbjct: 232 REEVETKWMNIWCPIILYEFYGNDRQVQAGMSSFLIPSLLGVSPGITVK 280
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 362 VPTRACVQRSSTPSGAPLTNSLGPL 288
+PT A V++S+TP G L+N G L
Sbjct: 71 LPTYASVEKSTTPIGRLLSNLNGGL 95
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 354 RRHQQGSSDHDPEEPHLGPDPPV 422
+ H +S H+PEE P P V
Sbjct: 254 KEHSPATSKHEPEETPASPTPSV 276
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 6.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 144 LRNIEGIHFFSKNNQSSLGSFADLFE 67
LR+ G+H++++ ++S +F D E
Sbjct: 108 LRSKNGLHYYAERERNSTSNFVDRIE 133
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 233 VTGNLCRHTAHPSNPRASATD-PNYLSREHPKVYSNVA 343
+ L HT HPS SAT P+ L V N++
Sbjct: 30 LVNTLTAHTVHPSTELPSATSFPSALPNSENPVIQNIS 67
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 200 SGRKNSLSSSLVTGNLCRHTAHPSNPRASATDPNYLSRE 316
+GR + +S+SL +A PSNPR N+ +R+
Sbjct: 186 AGRGSQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRK 224
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 220 LEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCTHARVGTSKVPLTTTLKNR 399
LEF + MS C+ L LF KGAPE +L + + ++ + TL ++
Sbjct: 592 LEFDPVLRRMSVICSTSTERSL----MLFTKGAPESILAISSQQSIPSNVQEVIHTLSSK 647
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 357 RHQQGSSDHDPEEPHLGPDP 416
R + +DHDP P + P P
Sbjct: 749 RQSEYKNDHDPRNPPIPPSP 768
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,244
Number of Sequences: 5004
Number of extensions: 44551
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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