Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c10
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 100 1e-21
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 57 9e-09
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 53 1e-07
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 36 0.019
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 36 0.025
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 32 0.31
06_01_0840 + 6369046-6369672 31 0.54
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990... 31 0.71
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 30 0.94
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215 30 1.2
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 29 1.6
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 29 2.2
11_04_0029 + 12477731-12477921,12477936-12478065,12478071-12478955 28 3.8
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 3.8
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 28 5.0
07_03_0586 + 19704862-19705344 27 6.6
06_03_1393 + 29846884-29847465 27 6.6
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 27 6.6
12_02_0046 + 12830974-12832386 27 8.8
02_05_0963 - 33126238-33126831 27 8.8
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 27 8.8
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 99.5 bits (237), Expect = 1e-21
Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Frame = +1
Query: 4 IGTICVMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKMN--PFNVPKTGLD---RRSS 168
I +CN+S + +N K+ +EK+GE+TE AL VL EK+ F+ + L+ +
Sbjct: 462 IAMCSALCNESTLQYNPDKKCYEKIGESTEVALRVLVEKVGLPGFDSMPSALNMLTKHER 521
Query: 169 AIVVRQEIETKWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCTH 348
A + E +++K LEFSRDRK MS C+ K + +F KGAPE V+ RCTH
Sbjct: 522 ASYCNRYWENQFRKISVLEFSRDRKMMSVLCS-RKQQEI-----MFSKGAPESVMARCTH 575
Query: 349 ARVGT--SKVPLTTTLKNRILDLTRQYGTGRDTLRCLALATADNP 477
S VPLT ++N L+ Q G+DTLRCLALA P
Sbjct: 576 ILCNDDGSSVPLTMDIRNE-LEARFQSFAGKDTLRCLALALKRMP 619
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 56.8 bits (131), Expect = 9e-09
Identities = 53/155 (34%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Frame = +1
Query: 4 IGTICVMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKMN-PFNVPKTGLDRRSSAIVV 180
I I +CND+++ + + + G TE AL VL EKM P + LD S +
Sbjct: 436 IAKISAVCNDASVAHSSHQ--YTATGMPTEAALKVLVEKMGIPEGMNGLSLDP-SETLGC 492
Query: 181 RQEIETKWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCTHARV- 357
Q K+ TLEF R RKSM + S+ G L VKGA E +LER +H ++
Sbjct: 493 CQWWSNVAKRIATLEFDRTRKSMGV----IVKSKSGRNA-LLVKGAVENLLERSSHIQLQ 547
Query: 358 GTSKVPLTTTLKNRILDLTRQYGTGRDTLRCLALA 462
S VPL + IL+ + LRCL A
Sbjct: 548 DGSVVPLDEKSRKAILENLHEMSI--KALRCLGFA 580
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 53.2 bits (122), Expect = 1e-07
Identities = 54/154 (35%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 IGTICVMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKMNPFNVPKTGLDRRSSAIVVR 183
I I +CND++I +E + + G TE AL VL EKM LD S +
Sbjct: 444 IAKIAAVCNDASIAHSEHQ--YVATGMPTEAALKVLVEKMGLPGGYTPSLDS-SDLLRCC 500
Query: 184 QEIETKWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCTHAR-VG 360
Q K+ TLEF R RKSM +K + G L VKGA E +LER + + +
Sbjct: 501 QWWNNAAKRVATLEFDRTRKSMGVI---VKKADSGKN-LLLVKGAVENLLERSGYIQLLD 556
Query: 361 TSKVPLTTTLKNRILDLTRQYGTGRDTLRCLALA 462
S V L K IL R+ LRCL A
Sbjct: 557 GSVVLLDEGAKALILSTLREMSA--SALRCLGFA 588
>05_05_0338 +
24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 35.9 bits (79), Expect = 0.019
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 GPKLFVKGAPEGVLERC-THARVGTSKVPLTTTLKNRILDLTRQYGTGRDTLRCLALATA 468
G + F KGA E +LE+C T + VPL+ K+ +L++ + + + LR L +A
Sbjct: 502 GIRTFCKGASEIILEQCNTIHNTDGNIVPLSEMQKHNVLNIINSFAS--EALRTLCIAFK 559
Query: 469 DNPLKPDEMDLGD 507
D P++ + D
Sbjct: 560 DMDEFPNDQPISD 572
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 35.5 bits (78), Expect = 0.025
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +1
Query: 169 AIVVRQEIETKWKKEFTLE-FSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERCT 345
A+ R IE + +E F+ +K+M+ PS G P+ F+KGA E VL RC+
Sbjct: 542 AVEKRARIEHTGAGKLKVEPFNSVKKTMAVVIA--SPSA-GGRPRAFLKGASEVVLSRCS 598
Query: 346 HARVGTSKV-PLTTTLKNRILDLTRQYGTGRDTLRCLALATAD 471
GT V LT R+ + + LR L LA D
Sbjct: 599 LVLDGTGNVEKLTDAKAKRVASAIDAFAC--EALRTLCLAYQD 639
>12_01_0639 +
5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 31.9 bits (69), Expect = 0.31
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -3
Query: 414 GQVQDAVLQGRGQRNLAGADASVCATFEYTFGCSLDK*FGSVA 286
GQ AV+ G + AGADA+ EYT+GC L GS A
Sbjct: 174 GQAGAAVVDGFAEMRAAGADAN-----EYTYGCVLKSISGSAA 211
>06_01_0840 + 6369046-6369672
Length = 208
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 199 KWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGA 318
KW E L SR+R + +Y TP K +R + +F++GA
Sbjct: 27 KWVAEIRLPNSRERVWLGSYDTPEKAARAFDAAFVFLRGA 66
>08_02_0070 -
11897089-11898150,11898389-11898644,11898755-11899059,
11899149-11899550
Length = 674
Score = 30.7 bits (66), Expect = 0.71
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 4 IGTICVMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKMNPFNVPKTGLDRRSSAIVVR 183
I I S + E EK GEA L+ +++ P NV + D S+
Sbjct: 257 INVIASNSRGSCFLYAEDFSGVEKTGEAIAEFLLKAIDEIGPGNVLQVVTDNASNCKAAG 316
Query: 184 QEIETKWKKEF 216
+EIE + K+F
Sbjct: 317 KEIEKDFSKKF 327
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 30.3 bits (65), Expect = 0.94
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 283 LGNGP-KLFVKGAPEGVLERCTHARVGTSK-VPLTTTLKNRILDLTRQYGTGRDTLRCLA 456
L NG + F KGA E +L+ C G +PL+ + ILD + + CLA
Sbjct: 571 LPNGTSRWFCKGASEIILQMCDMMVDGDGNAIPLSEAQRKNILDTINSFASDALRTLCLA 630
Query: 457 LATADNPL 480
D+ +
Sbjct: 631 YKEVDDDI 638
>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
Length = 257
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 444 QRIATSTVLAGQVQDAVLQGRGQRNLAGADASVCATFEYTF 322
+R A+S+V + +V + G ++ A ASVCA E +F
Sbjct: 154 ERSASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSF 194
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 304 FVKGAPEGVLERCTHARVGTSK-VPLTTTLKNRILDLTRQYGTGRDTLRCLALATADNPL 480
F KGA E +L+ C G +PL+ + ILD + + CLA D+ +
Sbjct: 557 FCKGASEIILQMCDMMVDGDGNAIPLSEAQRKNILDTINSFASDALRTLCLAYKEVDDDI 616
>04_03_0535 -
16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 220 LEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKGAPEGVLERC 342
LEF+ DRK MS ++ ++ L KGA E +L RC
Sbjct: 458 LEFTSDRKRMSAVVKDVQSGKI----LLLSKGADEAILPRC 494
>11_04_0029 + 12477731-12477921,12477936-12478065,12478071-12478955
Length = 401
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 332 STPSGAPLTNSLGPLPRREGLRGVQYVD 249
STP+G + SL P PR+ G + +VD
Sbjct: 250 STPTGMEIEISLPPSPRKRGKKRTPFVD 277
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 335 SSTPSGAPLTNSLGPLPRREGLRGVQYVDIDFLSRENS 222
S P+ P +N L P + R VQYV F + EN+
Sbjct: 1585 SVPPNRGPKSNQLHPSRNQRSTRSVQYVSESFNNGENT 1622
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 164 DRRSKPVLGTLKGFIFSARTIRAVSVASP--TFSNACLNSLKSIAE 33
DRRS+ + + GF++S + +R ++ P +F+N + L +A+
Sbjct: 246 DRRSRQTIQRIAGFVWSTQLLRCIACLDPRNSFANYDEDKLIELAK 291
>07_03_0586 + 19704862-19705344
Length = 160
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 413 PASTVLVAIRCVAWPWPRPI-TPSN 484
P TVLVA++ V P PRP TP+N
Sbjct: 100 PFRTVLVAVKDVKLPAPRPAPTPAN 124
>06_03_1393 + 29846884-29847465
Length = 193
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 245 LCRHTAHPSNPRASATDPNYLSREHP 322
L RH PS PRAS+ DP+ + + P
Sbjct: 20 LLRHRRRPSIPRASSGDPSPTAADAP 45
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 315 STRRCTRTLHTR--SRRHQQGSSDHDPEEPHLGPDP 416
S R+C R H+R RRH G++D D + P+P
Sbjct: 417 SPRQCDRGGHSRHGGRRHHAGATDVDNVTDPVHPEP 452
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 381 HDPEEPHLGPDPPVRYWS 434
HDP EP PDPP++ ++
Sbjct: 351 HDPFEPPPSPDPPIQSYA 368
>02_05_0963 - 33126238-33126831
Length = 197
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 178 VRQEIETKWKKEFTLEFSRDRKSMSTYCTPLKPSRLGNGPKLFVKG 315
VR+ KW E L SRDR + +Y +P K +R + + ++G
Sbjct: 8 VRRRKWGKWVSEIRLPNSRDRIWLGSYDSPEKAARAFDAAFVTLRG 53
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = -1
Query: 296 GPLPRREGLRGVQYVDIDFLSRENSRVNSFFHLVSIS*RTTIAEDRRSKPVLGTLKGFIF 117
G +P + YVD+ + +S +F +++ TT+ D S + GT+ +F
Sbjct: 278 GTVPDLTSANALTYVDLSNNNFMSSPAPRWFS--TLTSLTTLFMD--SDHLTGTIPSALF 333
Query: 116 SARTIRAVSVASPTFSNACLNSLKSIAESLHITQM 12
S ++ +S+A +FS LN +I+ L + +
Sbjct: 334 SFPQLQQISLAKNSFSGE-LNMSSNISSLLRVVNL 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,896
Number of Sequences: 37544
Number of extensions: 323908
Number of successful extensions: 1229
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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