Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c09
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    60   2e-11
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 45/199 (22%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 35  DKIVIVTGGANGIGAFSVEVFIENQAKHVAIL-DIDTISGFKLEKHLNTTYGDGKVKFYK 211
           D++ +VTG  +GIG   +E  +    K + I   +D +    L + L +    GK+   +
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK--TLVEELKSK--PGKLVPLQ 62

Query: 212 CDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEG-----IRRLVDINVTALVMS 376
           CD+S  + +      V  + G ID+++NNA ++++ +L+       +++ DIN+  L   
Sbjct: 63  CDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCM 122

Query: 377 TLKAIEIMRVDKTGKGGTIINISSIAALK--QFCPSVFVYCGTKSAVLQFSNCIGKQEYF 550
             + +++M+  K    G I+NI+  + L       +   Y  +K A+   ++C+  +   
Sbjct: 123 IQEVLKLMK-KKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQ 181

Query: 551 SKTGVRVITVCYGPTDTDL 607
            ++ ++VI++     +TD+
Sbjct: 182 CESNIKVISISPDLVETDM 200


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 453 AIDEMFIIVPPFPVLSTRIISIAFNVLMTKAVTFMSTSLRIPS 325
           +I  + ++    P  S   I++  N+L+++ + F+  S  IPS
Sbjct: 248 SISYLSVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPS 290


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  VRLVLKYLLKIRPSMLPSWTSTQFPDSNWK 164
           ++ V+K+L++ +P +  S  +   PD  ++
Sbjct: 87  IKKVIKFLVENKPELWDSLANKYDPDKKYR 116


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  VRLVLKYLLKIRPSMLPSWTSTQFPDSNWK 164
           ++ V+K+L++ +P +  S  +   PD  ++
Sbjct: 87  IKKVIKFLVENKPELWDSLANKYDPDKKYR 116


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 160 GKTFKYYIRRWKSK 201
           GK  ++Y+RR KSK
Sbjct: 192 GKELEFYMRRIKSK 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,150
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)