Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c04
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 46 3e-06
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 36 0.005
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 34 0.010
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.39
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 1.6
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 1.6
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 4.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 4.8
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 46.0 bits (104), Expect = 3e-06
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +3
Query: 162 KHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA--HVGHCHPHVVEAGRNQ 335
K GA + P+ +G +++D+ G +Y+D + VA +GH HP V +Q
Sbjct: 41 KKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQ 100
Query: 336 MS-LISTNNRYLHDELVILAQRLVNTLPESLSVC-----FFVNSG 452
S L+ ++N + ++ + L+ + N+L ++ + FF N G
Sbjct: 101 CSKLVHSSNLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANCG 145
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 237 MYDETGERYLDCINNVAHV--GHCHPHVVEAGRNQMSLISTNNRYLHDE 377
++D G YLD ++ + V GHCHP ++EA Q ++ ++R +++
Sbjct: 43 VWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSRAFYND 91
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 34.3 bits (75), Expect = 0.010
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINN--VAHVGHCHPHVVEAGRNQMSLIS--TNNRYLH 371
P +VR ++Y E G R +D VA +GH + V++A Q + + + +
Sbjct: 28 PPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSN 87
Query: 372 DELVILAQRLVNTLPESLSVCFFVNSG 452
+ LA LV+ P+ + +F NSG
Sbjct: 88 EPADKLANLLVSEHPDVFARAYFANSG 114
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.1 bits (62), Expect = 0.39
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 213 FSRGKNGKTVGTPLQHVSREVEWFQIWALIVNKPL*TTV*SYL 85
+S KN TVG LQ ++ V W I LIVN+P + S+L
Sbjct: 199 YSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFL 240
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 320 LNNMWMTMADMGNVVDAVEIPFAGFVIHELCYSSHYFQGGRTEKQLARRSNMFLAK 153
L+N+W + + D V A + I LC S Y+Q TE + RSN+ + K
Sbjct: 1432 LHNLWKPHLQLNCLSDEV----AQYYI-TLCKGSFYYQMRNTEDMVISRSNLDIQK 1482
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 180 CQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 287
C + F S +I ++ + + E G+R ++C+NN++
Sbjct: 422 CVVAFEFSSEEIPSNLSNY-FQEVGDRTIECLNNIS 456
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 96 IQSFTMAYLQSMPKSETIQLR-EKHVGAACQLFFR 197
+ F+ AY++ PK E +QL+ + V Q FF+
Sbjct: 997 LNEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFK 1031
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 447 SLRRSKRTMILVMYSRAFVLE*LARREDSGCLSILETFDFYQPQQHVDDNGRHG 286
+LR + R +L+ S ++ L R D+G L F F P +D N R G
Sbjct: 393 ALRYNLRISLLLTASSDTTVK-LWSRGDAGAFECLHVFSFSSPVNCIDWNLREG 445
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 338 HLISTSLNNMWMTMADMGNVVDAVEIPFAG 249
H IS + ++ ++ MGN V + +PF+G
Sbjct: 4 HKISDNHRHLMLSRFMMGNGVSIINMPFSG 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,689
Number of Sequences: 5004
Number of extensions: 38442
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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