Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c04
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 84 5e-17
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 70 9e-13
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 63 1e-10
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 40 0.001
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 34 0.074
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 33 0.17
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 33 0.17
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 84.2 bits (199), Expect = 5e-17
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Frame = +3
Query: 141 ETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPHV 314
E + R++ +G++ ++ PL IV G Q++YDE G+RYLDC + V GHCHP +
Sbjct: 68 EILAKRKQFLGSSV-FYYYQKPLNIVEGKMQYLYDENGKRYLDCFGGIVTVSCGHCHPDI 126
Query: 315 VEAGRNQMSLIS-TNNRYLHDELVILAQRLVNTLPESLSVCFFVNSG 452
V A Q L+ T YL+ +V A+ L + +P +L V +FVNSG
Sbjct: 127 VNAVVEQTKLLQHTTTIYLNQPIVEFAEALASKMPGNLKVVYFVNSG 173
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 70.1 bits (164), Expect = 9e-13
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Frame = +3
Query: 192 FRSSPLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPHVV-----EAGRNQMSLIS 350
F S PL IV G Q+++DE G RYLD +A V GHCHP VV +AGR Q S +
Sbjct: 60 FYSKPLNIVEGKMQYLFDERGRRYLDAFAGIATVCCGHCHPDVVGAIAAQAGRLQHSTV- 118
Query: 351 TNNRYLHDELVILAQRLVNTLPESLSVCFFVNSG 452
YL+ + A+ L + +P L V FF NSG
Sbjct: 119 ---LYLNHAIADFAEALASKMPGDLKVVFFTNSG 149
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 219 RGIAQFMYDETGERYLDCINNVAHV--GHCHPHVVEAGRNQMSLISTNN-RYLHDELVIL 389
R ++++DE G RYLD +A V GHCHP VVEA NQ I + YL+ +
Sbjct: 94 RDYHKYLFDEDGRRYLDAFGGIATVCCGHCHPDVVEAMVNQAKRIQHSTVLYLNHAIADF 153
Query: 390 AQRLVNTLPESLSVCFFVNSG 452
A+ L +P L V FF NSG
Sbjct: 154 AEALAAKMPGDLKVVFFTNSG 174
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPHVVEAGRNQMSLISTNNR-YLHD 374
P+ +G + D G +Y+D ++ + V GHCHP V+ A + Q ++ ++R + +D
Sbjct: 58 PVVFSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVLRALKEQAERLTLSSRAFYND 117
Query: 375 ELVILAQRLVN 407
+ I A+ L +
Sbjct: 118 KFPIFAEYLTS 128
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 33.9 bits (74), Expect = 0.074
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINNV--AHVGHCHPHVVEAGRNQMSLI----STNNRY 365
PL I R ++YD G++YLD + + +G P +V+A Q+ + S NR
Sbjct: 511 PLVIERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLVKAATEQLHKLPFYHSFWNRT 570
Query: 366 LHDELVILAQRLVNTLPESLSVCFFVNSG 452
L + + L + FF NSG
Sbjct: 571 TKPSLDLAKELLSMFTAREMGKVFFTNSG 599
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +3
Query: 234 FMYDETGERYLDCINNV--AHVGHCHPHVVEAGRNQMSLISTNNRYLHDEL---VILAQR 398
++YD G +YLD + + +G P +V+A +Q++ + + + + + LA+
Sbjct: 59 YVYDSKGNKYLDTLAGLWCTALGGSEPRLVKAATDQLNKLPFYHSFWNSTAKPPLDLAEE 118
Query: 399 LVNTL-PESLSVCFFVNSG 452
L++ + + FF NSG
Sbjct: 119 LISMFTAKEMGKVFFTNSG 137
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINNV--AHVGHCHPHVVEAGRNQMSLI----STNNRY 365
PL I R ++YD G++Y+D + + +G P +++A +Q++ + S NR
Sbjct: 122 PLVIDRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLIKAATDQLNKLPFYHSFWNRT 181
Query: 366 LHDELVILAQRLVNTLPESLSVCFFVNSG 452
L + + L + FF NSG
Sbjct: 182 TKPSLDLANEILSMFTAREMGKIFFTNSG 210
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 32.7 bits (71), Expect = 0.17
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 192 FRSSPLKIVRGIAQFMYDETGERYLDCINNVA--HVGHCHPHVVEAGRNQ-MSLISTNNR 362
+ S + +V G +YD G YLD +A +GH P V A Q +L+ +N
Sbjct: 78 YNRSRVVLVAGRGCKLYDADGREYLDMAAGIAVNALGHADPDWVAAVSAQAATLVHASNV 137
Query: 363 YLHDELVILAQRLVNTLPESLSVCFFVNSG 452
V LA+RLV FF N+G
Sbjct: 138 QYTVPQVALAKRLVEA--SFADRVFFANTG 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,327
Number of Sequences: 37544
Number of extensions: 239282
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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