Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c04
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical pr... 99 9e-22
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 99 9e-22
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 58 3e-09
U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical p... 40 0.001
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 40 0.001
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 34 0.067
Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL031633-19|CAA21031.1| 710|Caenorhabditis elegans Hypothetical... 27 7.6
>U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical
protein T01B11.2b protein.
Length = 160
Score = 99 bits (238), Expect = 9e-22
Identities = 43/106 (40%), Positives = 67/106 (63%)
Frame = +3
Query: 135 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVAHVGHCHPHV 314
K E ++ R+ +G+ CQ+F+ P + R Q++YDE ++LDCI+NV HVGHCHP V
Sbjct: 27 KEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNVQHVGHCHPKV 86
Query: 315 VEAGRNQMSLISTNNRYLHDELVILAQRLVNTLPESLSVCFFVNSG 452
VEA Q++ + N R++ +L A+++++TLP L F NSG
Sbjct: 87 VEAISKQLATSTCNVRFVSTQLTDCAEQILSTLP-GLDTVLFCNSG 131
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +1
Query: 451 GSEANDLALRMAKN 492
GSEANDLALR+A++
Sbjct: 131 GSEANDLALRLARD 144
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 99 bits (238), Expect = 9e-22
Identities = 43/106 (40%), Positives = 67/106 (63%)
Frame = +3
Query: 135 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVAHVGHCHPHV 314
K E ++ R+ +G+ CQ+F+ P + R Q++YDE ++LDCI+NV HVGHCHP V
Sbjct: 27 KEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNVQHVGHCHPKV 86
Query: 315 VEAGRNQMSLISTNNRYLHDELVILAQRLVNTLPESLSVCFFVNSG 452
VEA Q++ + N R++ +L A+++++TLP L F NSG
Sbjct: 87 VEAISKQLATSTCNVRFVSTQLTDCAEQILSTLP-GLDTVLFCNSG 131
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +1
Query: 451 GSEANDLALRMAKN 492
GSEANDLALR+A++
Sbjct: 131 GSEANDLALRLARD 144
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +3
Query: 207 LKIVRGIAQFMYDETGERYLDCINNV--AHVGHCHPHVVEAGRNQ-MSLISTNNRYLHDE 377
L I +G QF++D G++YLD + VGHCHP + A Q L T + Y +
Sbjct: 23 LLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKINAALTEQAQKLWHTTSIYHTEP 82
Query: 378 LVILAQRLVNTLPESLSVCFFVNSG 452
+ A++L++ P L+ FFVNSG
Sbjct: 83 IYEYAEKLLSKFPSKLNSVFFVNSG 107
>U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical
protein C16A3.10c protein.
Length = 226
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 138 SETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPH 311
S+ I REK G C + + P+ + +G F++D G++Y D + + V GHCHP
Sbjct: 21 SQQIFDREKKFG--CHNY-KPLPVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPK 77
Query: 312 VVEAGRNQMSLISTNNRYLHDELV 383
+++ + Q S ++ +R ++ ++
Sbjct: 78 LLKVVQEQASTLTLTSRAFYNNVL 101
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 138 SETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPH 311
S+ I REK G C + + P+ + +G F++D G++Y D + + V GHCHP
Sbjct: 21 SQQIFDREKKFG--CHNY-KPLPVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPK 77
Query: 312 VVEAGRNQMSLISTNNRYLHDELV 383
+++ + Q S ++ +R ++ ++
Sbjct: 78 LLKVVQEQASTLTLTSRAFYNNVL 101
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 138 SETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCI--NNVAHVGHCHPH 311
S+ I REK G C + + P+ + +G F++D G++Y D + + + GHCHP
Sbjct: 21 SQQIFDREKKFG--CHNY-KPLPVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPK 77
Query: 312 VVEAGRNQMSLISTNNRY 365
+++ N+ ++ N +
Sbjct: 78 LLK--DNEAVVVFAENNF 93
>Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical
protein H25K10.5 protein.
Length = 516
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 146 HSTSRETCWSGVPTVFPFF 202
++T+ +TCW G P VF FF
Sbjct: 171 NNTALDTCWLGKPEVFTFF 189
>AL031633-19|CAA21031.1| 710|Caenorhabditis elegans Hypothetical
protein Y39A1A.22 protein.
Length = 710
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 258 RYLDCINNVAHVGHCHPHVVEAGR 329
R+L C+ HPH+V AG+
Sbjct: 468 RFLQCLRRYRDTKRVHPHLVNAGK 491
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,931,949
Number of Sequences: 27780
Number of extensions: 218246
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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