Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c04
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 VAHVGHCHPHVVEAGRNQMSLISTNNRY-LHDELVILAQRL 401
           + H  H HPH  E    Q+  I  N  +   +EL+++ + +
Sbjct: 459 IGHTPHHHPHPPETPGPQVETILQNACFCARNELMMILKEI 499


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 180 TPLQHVSREVEWFQIWALIV 121
           TPL  + R V+WF+   L+V
Sbjct: 48  TPLDRLQRVVDWFRKNMLLV 67


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 207 RGKNGKTVGTPLQHVSREVEW 145
           RGKN   +G  L      VEW
Sbjct: 186 RGKNVVDIGVDLSEFYTSVEW 206


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 161 ETCWSGVPTVFP 196
           E CWSG P+  P
Sbjct: 836 EQCWSGEPSKRP 847


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 161 ETCWSGVPTVFP 196
           E CWSG P+  P
Sbjct: 874 EQCWSGEPSKRP 885


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 464 LASDPRVYEE 435
           LASDP VYE+
Sbjct: 852 LASDPAVYED 861


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 323 SLNNMWMTMADM 288
           SL +MW+TM  M
Sbjct: 349 SLTDMWLTMLSM 360


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 323 SLNNMWMTMADM 288
           SL +MW+TM  M
Sbjct: 317 SLTDMWLTMLSM 328


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 320 LNNMWMTMADMGNVVDAVEIPFAGFVIHELCYSS 219
           L N W+   D  +V  ++++ F+   I  LC  S
Sbjct: 108 LENRWLFTTDWCDVWRSLDVLFSTASILNLCVIS 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,751
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)