Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c02
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.3  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.0  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   5.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.3  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   7.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   7.0  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.2  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   9.2  

>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 352 MFLKASSSISITRFDLKLIAILFPGIGLSCVIFVMLLLKNVTR 224
           M +  S + S+   D KL   L   +GLSC I ++L L   TR
Sbjct: 126 MVVDVSPAFSVNPIDKKLAIGL--SVGLSCCILIVLFLHFATR 166


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 206 KQRWSRPSDVFQQQHYKYNATESD 277
           K +++RPSD ++ ++  YNA  SD
Sbjct: 96  KGKFTRPSDEYESEYSDYNAQPSD 119


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +3

Query: 264 QLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDG 443
           ++ P     I+++   N  +++  D      +L  LD+SNN      LRS     P    
Sbjct: 423 KIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN------LRS-----PRGKP 471

Query: 444 IYREIALETLNLGYNEIHSLDRYLF 518
           I     LE LN+  N+I+ LD  +F
Sbjct: 472 ITALRQLEVLNMSRNDIYELDPLIF 496


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 156  RRDIVKIPNWPE----QINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFK 308
            R D+ +  N+ E    ++ N+S D H    F   S+T+   ++  P +R  +  K
Sbjct: 1073 RNDVAQEDNFIELSSNEVRNVSNDEHKHTLFHGQSLTHNNLIAVTPPSRTGVEHK 1127


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +3

Query: 168 VKIPNWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFR 347
           +K  NWP  ++N SKD    V+   N    + QL+P   +R  +  ++  V++  +   +
Sbjct: 275 LKAANWPRTVSNFSKD----VSDGENYTVLLNQLAPELCSRAPL--QTTDVLQRAEQVLQ 328

Query: 348 NIPRL 362
           N  +L
Sbjct: 329 NAEKL 333


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 175 ILTMSRREQFSVRLLVSSTDISQGALGASAP-ARFDDTRTIVIVNTAGKYIFLDNSQH 5
           +L  S  E+  V+LL SS   S+      A    FD+  + ++++   K+I L+N  H
Sbjct: 6   LLKKSIAEKKDVKLLASSEATSKVEKIEDAQYILFDENTSPILIDEPTKFIKLENDSH 63


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 355 GMFLKASSSISITRFDLKLIAILFPGIGLSCVI 257
           G+F++    ++  +F+ K +A LF  I ++C+I
Sbjct: 200 GVFIRVFYLVNKEKFEKKELAFLFSSIVVACLI 232


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +3

Query: 237 FNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFR-NIPRLVYLDLSNNKISGQVLRS 413
           +  +I +++  S +P +  A      ++   +D +    + RL  L+ + N  S  ++  
Sbjct: 24  YTRNIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNG-SNVIVLP 82

Query: 414 EIFQGPYEDGIYREIA--LETLNLGYNEIHSL 503
           EIF  PY  G + + A  +E  +  Y  + S+
Sbjct: 83  EIFNSPYGTGYFNQYAEPIEESSPSYQALSSM 114


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 33  FPAVLTITIVLVSSNRAGADAPSAPCDISVEDTSNLTLNCSRRD 164
           FP+   +    V+ +  G D   A  D   +D + LT+N +R++
Sbjct: 498 FPSPDEVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQE 541


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 291 IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISG 398
           +++    N + EI   A   +P+L  L+L++NKI+G
Sbjct: 359 VSLDLSGNELTEIPY-ALGELPQLCSLNLASNKITG 393


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 236 FQQQHYKYNATESDTGEQDRDQFQIKSR 319
           ++++HY+YNA  ++  E++ +  Q  S+
Sbjct: 259 YKKEHYEYNALVAELEERNDNTLQAASK 286


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/64 (20%), Positives = 27/64 (42%)
 Frame = +3

Query: 240 NNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEI 419
           NN +TN T+  P+    I + F   + ++   +    I   +       ++ G++ R  +
Sbjct: 245 NNIMTNTTEQEPMEERAINVRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVL 304

Query: 420 FQGP 431
             GP
Sbjct: 305 LTGP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,498
Number of Sequences: 5004
Number of extensions: 42044
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)