Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c02
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z79596-5|CAB01858.3| 369|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 38 0.003
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 38 0.003
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 34 0.055
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 34 0.055
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 34 0.072
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 34 0.072
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 33 0.17
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 32 0.22
Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical pr... 31 0.51
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 31 0.51
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 31 0.51
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 30 0.89
Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 28 3.6
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 28 3.6
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 28 3.6
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 28 3.6
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical... 28 4.8
Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical pr... 27 6.3
AC103567-4|AAL35731.2| 598|Caenorhabditis elegans Hypothetical ... 27 6.3
AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical ... 27 8.3
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 138 LTLNCSRRDIVKIPNWPEQINNISKDGHVLVTFFNN-SITNITQLSPIPGNRIAISFKSN 314
L L+ + + +IP E +++ H+L NN I + +QL+ GN +SF +N
Sbjct: 680 LQLHVNNNKLSRIPL--EALSSTMASLHLLDLAHNNIKIVDSSQLTSF-GNLSILSFANN 736
Query: 315 RVIEIEDDAFRNIPRLVYLDLSNNKIS 395
+V IED AF N+ L LDLSNN ++
Sbjct: 737 KVDSIEDGAFENLLSLKILDLSNNPVT 763
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
N + I F N+ L YLDLS+N+I ++L S ++Q P AL+ L+L +N
Sbjct: 474 NNIRTITSMTFSNLRNLRYLDLSHNRII-KILPSALYQLP---------ALDVLHLDHNN 523
Query: 492 IHSLDRYLFK 521
++ +DR F+
Sbjct: 524 LNEIDRDAFR 533
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/93 (23%), Positives = 48/93 (51%)
Frame = +3
Query: 240 NNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEI 419
NN + + L + R + +N++ +I++ + ++P+L +L L+ N++ ++ +
Sbjct: 377 NNQLAHFPSLFRLDKLR-HLMLDNNQIQKIDNFSLADLPKLQHLSLAGNQLD--IITENM 433
Query: 420 FQGPYEDGIYREIALETLNLGYNEIHSLDRYLF 518
F G L++LNL +N+IHS+ F
Sbjct: 434 F------GSSSSSELKSLNLAHNKIHSISSRSF 460
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 198 NNISKDGHVLVTFFNNSITNITQLSPIPGNRIA-ISFKSNRVIEIEDDAFRNIPRLVYLD 374
N ++ + + V NN + + + S +I + N++ +ED +F + + LD
Sbjct: 139 NEVTFESEMKVILRNNKVRRLDKHSFRSFRKIRELDISYNQIQTVEDSSFETVGHMQSLD 198
Query: 375 LSNNKIS 395
LS N+I+
Sbjct: 199 LSYNRIA 205
>Z79596-5|CAB01858.3| 369|Caenorhabditis elegans Hypothetical
protein C02C6.3a protein.
Length = 369
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = +3
Query: 228 VTFFNNSITNITQLSPIPG-----NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
VTF N+ ++T +P+ G + I ++ +N ++ + +A RN+P L LD+SNN+I
Sbjct: 100 VTFHGNNFQDLTS-TPLFGADSQTSLIKLNLSANYIVNLNSNALRNMPNLQVLDISNNEI 158
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 240 NNSITNITQ--LSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRS 413
NN +T ++Q L P R+ +S +N + E+ + +F ++P L LDL+NNKI L++
Sbjct: 333 NNCLTEVSQQTLKGAPFLRM-VSLSNNNIREVHELSFDHLPNLHTLDLANNKIMS--LQN 389
Query: 414 EIFQGP 431
+ GP
Sbjct: 390 KSLSGP 395
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 240 NNSITNITQ--LSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRS 413
NN +T ++Q L P R+ +S +N + E+ + +F ++P L LDL+NNKI L++
Sbjct: 333 NNCLTEVSQQTLKGAPFLRM-VSLSNNNIREVHELSFDHLPNLHTLDLANNKIMS--LQN 389
Query: 414 EIFQGP 431
+ GP
Sbjct: 390 KSLSGP 395
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISG 398
N++ +IE+ F + +L +LDLSNNKISG
Sbjct: 399 NKIHDIEEGTFDKLSKLFWLDLSNNKISG 427
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +3
Query: 138 LTLNCSRRDIVKIPNWPEQINNISKDGHVLVTFFNNSITNIT--QLSPIPGNRIAISFKS 311
+++N + I IP+ + N +S + + NN+I + L + + + +
Sbjct: 129 MSMNLNSNQISSIPD--KAFNGLSALTQLRLE--NNAICDFPPKSLDAVKASLVLLDVSG 184
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPY 434
N + I RN L+YLDL +N IS ++ E+ P+
Sbjct: 185 NCLDAIPAQILRNAANLMYLDLGSNNIS-EINNFELMNLPF 224
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Frame = +3
Query: 243 NSITNITQLSPIPG-NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEI 419
N IT I L+ N IS ++N +++I ++F ++ +LV L + NN ++ + +
Sbjct: 303 NLITKIETLAFSNNPNLQLISVQNNNIVQISRNSFESLDKLVVLLVGNNSLAK--IERGM 360
Query: 420 FQG---------------PYEDGIYREIA-LETLNLGYNEIHSLDRYLF 518
F G + + ++A L TL+LG+N+IH ++ F
Sbjct: 361 FDGMKNLQQLSIRNNTLTALDASSFAQLAHLTTLDLGHNKIHDIEEGTF 409
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 207 SKDGHVLVTFFNNSITNITQ-LSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSN 383
S D V++ NNS+ I + + N +S ++N + ++ +F + L LDL +
Sbjct: 339 SLDKLVVLLVGNNSLAKIERGMFDGMKNLQQLSIRNNTLTALDASSFAQLAHLTTLDLGH 398
Query: 384 NKI 392
NKI
Sbjct: 399 NKI 401
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 34.3 bits (75), Expect = 0.055
Identities = 30/94 (31%), Positives = 45/94 (47%)
Frame = +3
Query: 225 LVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQV 404
+VT N S +++ L + +R NR+ + D+ F+N +L +LDLS N I+ V
Sbjct: 80 IVTIHNQSFSSLVFLQKLRLSR-------NRIRHLPDNVFQNNLKLTHLDLSENDIT--V 130
Query: 405 LRSEIFQGPYEDGIYREIALETLNLGYNEIHSLD 506
+ QGP LE LNL N I L+
Sbjct: 131 VSDAQLQGPE--------FLEVLNLDKNHIFCLE 156
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 276 IPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
+P + I + N++ I +F+N+ L LDLS N I+
Sbjct: 285 LPPSTTEIRLEQNQISSIPSHSFKNLKNLTRLDLSKNIIT 324
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
+ NR+I +E++ F N+ RL L +S NK+
Sbjct: 733 LDLSHNRLISLENNTFSNLTRLSTLIISYNKL 764
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 34.3 bits (75), Expect = 0.055
Identities = 30/94 (31%), Positives = 45/94 (47%)
Frame = +3
Query: 225 LVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQV 404
+VT N S +++ L + +R NR+ + D+ F+N +L +LDLS N I+ V
Sbjct: 80 IVTIHNQSFSSLVFLQKLRLSR-------NRIRHLPDNVFQNNLKLTHLDLSENDIT--V 130
Query: 405 LRSEIFQGPYEDGIYREIALETLNLGYNEIHSLD 506
+ QGP LE LNL N I L+
Sbjct: 131 VSDAQLQGPE--------FLEVLNLDKNHIFCLE 156
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 276 IPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
+P + I + N++ I +F+N+ L LDLS N I+
Sbjct: 285 LPPSTTEIRLEQNQISSIPSHSFKNLKNLTRLDLSKNIIT 324
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
+ NR+I +E++ F N+ RL L +S NK+
Sbjct: 733 LDLSHNRLISLENNTFSNLTRLSTLIISYNKL 764
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 33.9 bits (74), Expect = 0.072
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Frame = +3
Query: 267 LSPIPGN-RIAIS---FKSNRVIEIEDDAFRNIPRLVYLDLSNNKISG-QVLRSEIFQG- 428
L+ IPG+ IA + F +N + + F+ +P L YLDLSNN I + + F G
Sbjct: 35 LTAIPGHIPIATTNLYFSNNLLNSLSKSNFQALPNLQYLDLSNNSIRDIEETLLDSFPGL 94
Query: 429 PYEDGIYREI-----------ALETLNLGYNEIHSLDRYLFKYT 527
Y D + +I AL +LNL +NEI LD L ++
Sbjct: 95 KYLDLSWNKIRYVPKLSTAPNALVSLNLVHNEISRLDNDLVSHS 138
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 33.9 bits (74), Expect = 0.072
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Frame = +3
Query: 267 LSPIPGN-RIAIS---FKSNRVIEIEDDAFRNIPRLVYLDLSNNKISG-QVLRSEIFQG- 428
L+ IPG+ IA + F +N + + F+ +P L YLDLSNN I + + F G
Sbjct: 35 LTAIPGHIPIATTNLYFSNNLLNSLSKSNFQALPNLQYLDLSNNSIRDIEETLLDSFPGL 94
Query: 429 PYEDGIYREI-----------ALETLNLGYNEIHSLDRYLFKYT 527
Y D + +I AL +LNL +NEI LD L ++
Sbjct: 95 KYLDLSWNKIRYVPKLSTAPNALVSLNLVHNEISRLDNDLVSHS 138
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 198 NNISKDGHVLVTFFNNSITNITQ--LSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYL 371
N + V++ +N + +T +S +P N +SF+ N++ I +AF + LV L
Sbjct: 287 NAFTNSSIVVLVLSSNELKTLTAGIISGLP-NLQQVSFRDNQIKTINRNAFYDAASLVML 345
Query: 372 DLSNNKIS 395
DL+ N+++
Sbjct: 346 DLAKNQLT 353
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
++ N++ E+ AF N+P L YL LS NKI+
Sbjct: 202 LNLAGNQIHELNRQAFLNVPSLRYLYLSGNKIT 234
Score = 30.7 bits (66), Expect = 0.67
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
N + ++ A +P L+ LDLSNN I ++ EIF P + +Y +NLG N+
Sbjct: 85 NLIEKVPAAALAGLPNLLRLDLSNNSIV-EIQEQEIF--PNLNKLY------DINLGSNK 135
Query: 492 IHSLDRYLFK 521
I S+ F+
Sbjct: 136 IFSIHTSTFQ 145
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 294 AISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPY 434
+I + NR+ ++ F N+P + +LD+S N + Q + S +FQ +
Sbjct: 358 SIDLQGNRIDNVQPLGFANLPAISHLDISYNLL--QTMPSNVFQNSF 402
>Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical
protein C15H11.3 protein.
Length = 628
Score = 31.5 bits (68), Expect = 0.39
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 165 IVKIPNWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIE-DDA 341
++ + N+ E +KD + +T N +T + + GN +A+S +NR+ ++ A
Sbjct: 205 VLDLSNFHEDEEFKAKDMMMNLTKGNVMLTVLDHIDDKYGNIVALSLSNNRIRHLDYASA 264
Query: 342 FRNIPRLVY-LDLSNNKIS 395
+I + V LDLS+N IS
Sbjct: 265 LVSIAKFVMELDLSHNHIS 283
>Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical
protein T05A1.3 protein.
Length = 747
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 276 IPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQG 428
+P + +N++ + D AF ++ L+ LDL NN + + ++S F G
Sbjct: 259 LPAELKHVDLSNNKLTYLHDHAFEHLTNLILLDLKNNSL--KEVKSSSFAG 307
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
+S S+ + I AF IP L +LDLSNN++
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNEL 345
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 240 NNSITNIT--QLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRS 413
NN I+ ++ +LS P N + +N + + D F +P L LDLS+N + L +
Sbjct: 55 NNRISRLSADELSLYP-NLEQLILHNNSITHLSADVFSTLPSLRVLDLSSNSLLS--LPN 111
Query: 414 EIF 422
E+F
Sbjct: 112 EVF 114
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
+S S+ + I AF IP L +LDLSNN++
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNEL 345
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 240 NNSITNIT--QLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRS 413
NN I+ ++ +LS P N + +N + + D F +P L LDLS+N + L +
Sbjct: 55 NNRISRLSADELSLYP-NLEQLILHNNSITHLSADVFSTLPSLRVLDLSSNSLLS--LPN 111
Query: 414 EIF 422
E+F
Sbjct: 112 EVF 114
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 NSITNITQLS-PIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
N I I++ S P+P N ++S + N++ I D+F P L YL L NN ++
Sbjct: 217 NRIHTISRNSLPLP-NLKSLSLEVNQIRLIPSDSFSETPLLSYLYLGNNLLT 267
>Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical
protein F10F2.4 protein.
Length = 656
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
I F SNR +EI+ A Y+DLSN ++
Sbjct: 217 IDFSSNRDLEIDSGALDVFSNATYVDLSNTRL 248
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 285 NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
N + F +N++ + D F+N +L YLD+S N I+
Sbjct: 159 NLETVVFSNNKLDSLGVDQFKNKKQLSYLDVSGNFIT 195
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 285 NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
N + F +N++ + D F+N +L YLD+S N I+
Sbjct: 159 NLETVVFSNNKLDSLGVDQFKNKKQLSYLDVSGNFIT 195
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 225 LVTFFNNSITNI-TQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
++ N + + T L G+ I ++ N + I + N+ L++LDLSNNK+
Sbjct: 107 IIDLSRNQLREVPTNLEYAKGS-IVLNLSYNNIETIPNSVCANLIDLLFLDLSNNKL 162
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 225 LVTFFNNSITNI-TQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
++ N + + T L G+ I ++ N + I + N+ L++LDLSNNK+
Sbjct: 107 IIDLSRNQLREVPTNLEYAKGS-IVLNLSYNNIETIPNSVCANLIDLLFLDLSNNKL 162
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 282 GNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
G+ +S + NR+ ++E F + L LDL+ NKI
Sbjct: 127 GSAELLSLRENRIKKLEKGLFTGLKSLKTLDLAMNKI 163
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 282 GNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
G+ +S + NR+ ++E F + L LDL+ NKI
Sbjct: 127 GSAELLSLRENRIKKLEKGLFTGLKSLKTLDLAMNKI 163
>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
protein T05H4.3 protein.
Length = 1152
Score = 27.9 bits (59), Expect = 4.8
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +3
Query: 225 LVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDD--AFRNIPRLVYLDLSNNKISG 398
L+ N ++++ ++S + ++ + I + D + + P L LD+SNN IS
Sbjct: 859 LIDLSKNRLSSVREISSFNITHLILNNNCLKSIAVNDGQTSLQPFPYLENLDISNNSISN 918
Query: 399 -QVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYLF 518
+LR GI + L+ +NL N + D LF
Sbjct: 919 TSILRL---------GIPLLLKLKNINLSQNALSRFDCSLF 950
>Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical
protein C04B4.4 protein.
Length = 480
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 186 PEQINNISKDGHVLVTFFNNSITNITQL 269
P+Q + +SK+G + F N+ N+T+L
Sbjct: 329 PDQKSQLSKNGSPKIRFMENTTNNVTRL 356
>AC103567-4|AAL35731.2| 598|Caenorhabditis elegans Hypothetical
protein Y51F10.4 protein.
Length = 598
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -3
Query: 221 VTIFAYVVYLFRPIRYLNDVSS*AVQRKVTCIFY 120
+ + VV++ P+ +++D+ +V V C+FY
Sbjct: 171 LVMIVVVVFIILPLSFIDDLKKFSVISSVACLFY 204
>AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical
protein H04D03.4 protein.
Length = 688
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 234 FFNNSI---TNITQLSPIPGNRIAISFKSNRVIEIEDDAF----RNIPRLVYLDLSNNKI 392
FF+N I N+T++S + + ++ + IE DD F N P L YLD+S I
Sbjct: 137 FFDNRIFLSDNLTRISQMLPSLQSLGVSN---IEFHDDDFSQLCNNFPNLTYLDISETNI 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,436
Number of Sequences: 27780
Number of extensions: 224831
Number of successful extensions: 793
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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