Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28c01
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 74 5e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 74 5e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 74 5e-14
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 31 0.49
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 2.6
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 2.6
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 2.6
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 2.6
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 6.0
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 27 6.0
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 8.0
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 8.0
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer ... 27 8.0
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 27 8.0
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 8.0
AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform... 27 8.0
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 8.0
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 8.0
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 74.1 bits (174), Expect = 5e-14
Identities = 39/70 (55%), Positives = 42/70 (60%)
Frame = +1
Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQXLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQ LFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 74.1 bits (174), Expect = 5e-14
Identities = 39/70 (55%), Positives = 42/70 (60%)
Frame = +1
Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQXLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQ LFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 74.1 bits (174), Expect = 5e-14
Identities = 39/70 (55%), Positives = 42/70 (60%)
Frame = +1
Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQXLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQ LFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.49
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 318 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 154
CS+ + S SHC T + RV ++ C P CR +LC SRY M Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355
Query: 153 CCKWSHQC 130
C K C
Sbjct: 356 CPKACGHC 363
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 129 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 218
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 69 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 194
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.6
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -1
Query: 423 QTHSLRQGETQNGV*EQXLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 247
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 246 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 130
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.6
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -1
Query: 423 QTHSLRQGETQNGV*EQXLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 247
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 246 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 130
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Frame = -1
Query: 471 NSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQXLLEGGVPGIADD------EGAED 319
+S E E+++ERH + ++T S+R T + + +++ + +A +
Sbjct: 15 DSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTSTPNSKQS 72
Query: 318 CSNTSSGTSYSHCRCTSTNEFGSR 247
S T S T+Y +C++ + + SR
Sbjct: 73 ISRTGSSTTYGSSKCSTDDHYRSR 96
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 120 LQLCTGATTCSSTHPYTDGTCCPYTA 197
+Q C+G C TH + CCP A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 318 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELC 190
C NT TS S+C C + S + L P C++ C
Sbjct: 51 CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 VCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 185
+C+QT C Q ++ C +++ CSS + G+CC
Sbjct: 330 ICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 194 CVGTAGTICVWVGTAASG-RTSAELQK 117
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 194 CVGTAGTICVWVGTAASG-RTSAELQK 117
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 194 CVGTAGTICVWVGTAASG-RTSAELQK 117
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 194 CVGTAGTICVWVGTAASG-RTSAELQK 117
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer
formation protein9, isoform b protein.
Length = 557
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 264 WCWCSDSGSSWFRSWYWNSLRLPHH 338
WC + S SSW + W + L HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 158 PPIHRWYLLSLHSSLQCGPSRPHRSLRTLTLLPNS 262
PP+ YL ++ +S C PSR R LR + +S
Sbjct: 368 PPVECPYLRTIQNSENCEPSREMRFLRVPSAFASS 402
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 66 QNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 194
QN C P + C + C+S + ++G CCP T
Sbjct: 72 QNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 156 YCCKWSHQCRVAEDGRPGCR 97
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform A
protein.
Length = 557
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 264 WCWCSDSGSSWFRSWYWNSLRLPHH 338
WC + S SSW + W + L HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 156 YCCKWSHQCRVAEDGRPGCR 97
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 156 YCCKWSHQCRVAEDGRPGCR 97
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,112
Number of Sequences: 27780
Number of extensions: 239774
Number of successful extensions: 958
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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