Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b24
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 133 1e-32
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.0
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 1.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 2.4
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 3.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.2
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 4.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 4.2
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 5.6
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 7.3
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 7.3
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 24 9.7
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 24 9.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 9.7
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 133 bits (321), Expect = 1e-32
Identities = 66/109 (60%), Positives = 80/109 (73%)
Frame = +1
Query: 133 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 312
L +F +L N S + Y +T NL++ S+TKVI QGFTGKQGTFH+Q A+DYGTKV
Sbjct: 12 LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67
Query: 313 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGAAAAILE 459
VGG +PKKAGT HLGKPVFGT++EA T A AS ++VPPP AA AI E
Sbjct: 68 VGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEE 116
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 1.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 190 PYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVG-GVSPKKAGTEHLGKPV 366
PY+ R NL +TS F G + H Q+ + ++ + PK+ + KPV
Sbjct: 470 PYSTFRLNLSVTSPYNA---DFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPV 526
Query: 367 FGTVKEAKAG 396
G V++ AG
Sbjct: 527 MGIVQDTLAG 536
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 348 FCTSLLW*HSSNNFSTIVKGLLAVEGTLLSSETLNNHFCFTCKD 217
FCTS ++ S + I+KG+LA + +++ HF TC +
Sbjct: 252 FCTSEVFRCLSKR-AEILKGVLASNVIAMQTDSYTRHFLSTCSN 294
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 401 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 300
P+P++ + ++PN G+P ++P P T +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 198
PF F N T +PV +S+ +G + N + P+A
Sbjct: 33 PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/69 (18%), Positives = 32/69 (46%)
Frame = +1
Query: 91 FTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQG 270
+ NN+ V+V F+ +KLG V ++T++N +++ ++ F +
Sbjct: 801 YKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVNFAKLLLSFNQFED 860
Query: 271 TFHSQQALD 297
H + +++
Sbjct: 861 NSHLRMSIN 869
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 176 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 87
NR PS+S SLN T ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 4.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 396 ACLCLFDCTKHRLTKMFCTSLLW*HS---SNNFSTIVKGLLAVEGTLLSSETLNNHFCFT 226
A L L +++ +F SL H+ NF+ I+ + ++ S+ NHF F
Sbjct: 632 AALDLISLIVNKVLALFDLSLFEKHNIPAPTNFNDIISFIPSITRLNELSQVSFNHFYFL 691
Query: 225 CKDQI 211
CK I
Sbjct: 692 CKGDI 696
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 107 LQWLCQSGFFLSSKMD*NSAMYDLHPATLM 196
L W S F ++ MD + +YD H L+
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLL 163
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +1
Query: 91 FTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQG 270
+TF+ S + V L D K+ R G ++ ++ + T + GF + G
Sbjct: 437 YTFDESISSSIVCTLRAAYDPPKV-RTRSTLGKVFSTNKRKSMTTDPVSEALHGFVSEDG 495
Query: 271 TF 276
TF
Sbjct: 496 TF 497
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 118 MPVRVLSKFKDGLKLGNVRF 177
MP+ +LS + G KLGNVRF
Sbjct: 214 MPLLLLS-LRPGTKLGNVRF 232
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 331 KKAGTEHLGKPVFGTVKEAKAG 396
KK G + GKP FG E K G
Sbjct: 238 KKIGVKDCGKPDFGVPVEFKEG 259
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = +2
Query: 80 PFVD-LHSIILQWLCQS 127
P++D LHSIIL WL S
Sbjct: 1638 PYIDKLHSIILFWLVPS 1654
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 9.7
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 67 SLVFPFRRFTFNNSTMAMPVRVLSKFKD----GLKLGNVRFASGNPYAETRKNLILTSET 234
S+V FTF NS M++ L G+ NV + E R I+T +
Sbjct: 1474 SMVGDGSAFTFVNSVMSILAHNLEPINKQTFGGVIYKNVGNVTVQQIGEIRPGDIVTFDK 1533
Query: 235 KVIVQGFTGKQGTFHSQQALDYGTKVVGGV 324
F+G++GT S+ +L+ G + G+
Sbjct: 1534 AK----FSGQKGTLRSKYSLEVGKPMHYGI 1559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,626
Number of Sequences: 5004
Number of extensions: 40203
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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