Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b24
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100... 119 1e-27
04_04_1339 + 32760424-32760584,32762428-32764462 33 0.15
01_07_0231 + 42176598-42178117,42178232-42179753 32 0.25
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124 28 4.2
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 27 5.5
02_01_0095 - 679597-679671,679775-679890,682241-682319,682446-68... 27 5.5
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 27 7.3
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 27 7.3
03_05_0896 - 28592658-28593331,28594069-28595455 27 7.3
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 27 9.6
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 9.6
>07_03_1015 +
23307700-23307906,23309274-23309483,23309915-23310085,
23310163-23310286,23310753-23310814,23311185-23311266,
23311870-23312009
Length = 331
Score = 119 bits (287), Expect = 1e-27
Identities = 55/82 (67%), Positives = 66/82 (80%)
Frame = +1
Query: 214 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 393
+ + T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37 VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96
Query: 394 GTGATASVIYVPPPGAAAAILE 459
T A ASVIYVPPP AAAAI+E
Sbjct: 97 ETKANASVIYVPPPFAAAAIME 118
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 76 FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 216
F RR N ST M V +L DGL G++ A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 31.9 bits (69), Expect = 0.25
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = +1
Query: 184 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 363
G E I++S TK TGK TF +L VGG + +G+
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729
Query: 364 VFGTVKEAKAGTGATASV 417
VFGTV A G G ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747
>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
Length = 904
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 397 TGATASVIYVPPPGAAAAI 453
T AT S+ +VPPP A+AA+
Sbjct: 790 TMATTSIRFVPPPAASAAV 808
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -2
Query: 255 ETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIFELRKNPDW-----HSHCRIIECK 91
+TL +H CK QI G + G Y+ ++ E +KNPDW C C+
Sbjct: 227 KTLGHHTS-CCKCQIVQG---QFCGDCLYMRYGENVLEAKKNPDWICPVCRGICNCSICR 282
Query: 90 STKG 79
+ KG
Sbjct: 283 TKKG 286
>02_01_0095 -
679597-679671,679775-679890,682241-682319,682446-682539,
682638-682716,682846-682933,683023-683106,683351-683398,
684044-684118,684274-684315,684347-684416,684551-684589,
685118-685191,686936-687028,687203-687300,688170-688236
Length = 406
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 295 DYGTKVVGGVSPK--KAGTEHLGKPVF 369
DY T+ VGG P+ KA TE L K F
Sbjct: 16 DYSTRYVGGSEPRLVKAATEQLNKLPF 42
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 396 HRSNCLCYLCTSPWSCSS 449
H C CY+C P CSS
Sbjct: 141 HCEQCFCYVCDVPAPCSS 158
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.1 bits (57), Expect = 7.3
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 SKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGF-TGKQGTFH----SQQALDY 300
SK DG G R A N A T+ +S+ I GF T G H QA+D
Sbjct: 260 SKPSDGEHSGEKRRAQANKSAATKDKAGSSSKNAGIGDGFETQLLGGAHMSKDQDQAMDL 319
Query: 301 GTKVVGGVSPK 333
G V V PK
Sbjct: 320 GEVVKEAVDPK 330
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 334 KAGTEHLGKPVFGTVKEAKAGTGATASV 417
+A E LGK FGT +A +GAT +V
Sbjct: 377 RASAEVLGKGAFGTTYKAVLESGATVAV 404
>05_03_0603 -
16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 378 DCTKHRLTKMFCTSLLW*HSSNNFSTIVKGLLAVEGTLLSSETLNNHFCFTCKDQIFS 205
D +++ CT+LL H ++ + +KGL+ +E E L+ C K+Q++S
Sbjct: 24 DSRQYKAALKLCTALLAKHPTSPYVLALKGLI-LERMGKPDEALS--VCLNAKEQLYS 78
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 205 RKNLILTSETKVIVQGFTGKQGTFHSQQALDYG---TKVVGGVSPKKAGTEHLGKPVFGT 375
+KN++ TSE V + T K+ F ++ + G TK GV ++ + G V T
Sbjct: 1087 QKNIVPTSEESVPEENATAKEPAFDDREIQNDGAELTKEHDGVKDEEIPDQSSGAIVEET 1146
Query: 376 VKEA 387
+EA
Sbjct: 1147 AQEA 1150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,677
Number of Sequences: 37544
Number of extensions: 276070
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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