Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b24
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...   126   1e-29
Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...   118   2e-27
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    29   1.2  
U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical p...    29   1.6  
U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...    27   5.0  
U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine rece...    27   6.6  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   8.7  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   8.7  
AF043702-6|AAK21497.2|  306|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score =  126 bits (303), Expect = 1e-29
 Identities = 60/89 (67%), Positives = 69/89 (77%)
 Frame = +1

Query: 193 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 372
           Y +TR NL++   TKVIVQGFTG+QGTFHS+Q L+Y T +VGGVSP KAG  HLG PVFG
Sbjct: 22  YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFG 81

Query: 373 TVKEAKAGTGATASVIYVPPPGAAAAILE 459
           +V EAK  TGA A+VIYVP  GAA AI E
Sbjct: 82  SVAEAKDRTGADATVIYVPAAGAARAIHE 110


>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score =  118 bits (284), Expect = 2e-27
 Identities = 58/89 (65%), Positives = 65/89 (73%)
 Frame = +1

Query: 193 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 372
           Y  T  NL +  +TKVIVQGFTGKQGTFH +Q L+Y TKVVGGV+  KAGTEHLG PVF 
Sbjct: 21  YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80

Query: 373 TVKEAKAGTGATASVIYVPPPGAAAAILE 459
            V EA+  TGA ASVIYVP   A +AI E
Sbjct: 81  NVSEARNKTGADASVIYVPASAAGSAIEE 109


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +1

Query: 130 VLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKV--IVQGFTGKQGTFHSQQALDYG 303
           V   FKD +KL N+R A    Y+E  ++L+  +  +V  + +G     G     + L   
Sbjct: 280 VFEPFKDVVKLMNLREALPRQYSEHDQSLMSKNLKQVMNMAKGLKSSGGDIKRLENLRSN 339

Query: 304 TKVVGGVSPKKAGTEHLGK 360
           TK +  V  K  G   LG+
Sbjct: 340 TKELEMVDLKNIGDPWLGR 358


>U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical
           protein F09E5.16 protein.
          Length = 100

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 441 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 352
           SSRG  +  R + S AC CL   CT H +TK
Sbjct: 70  SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100


>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 309 FSTIVKGLLAVEGTL--LSSETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*S-IFEL 139
           +S  V   LA+ G L  + S+ +   F + C+D    GF+ R   C S++      IF L
Sbjct: 247 YSWWVLASLAILGRLNFIDSDAMKK-FIYACQDDETGGFADRPGDCVSFLNNIQKFIFVL 305

Query: 138 RKNPDWHSHCRIIEC 94
           + N    +  ++ EC
Sbjct: 306 QSNNVLATTKQLFEC 320


>U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein67 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 444 CSSRGRYINNRGSCSCACLCLFDCTKHRLTKMFCTSLLW*HSS 316
           C+S   ++   G C   CLCLF    + LT +F     W + S
Sbjct: 64  CNSINIFLMGTGICDMFCLCLF-IHAYTLTLIFPDDRCWNYHS 105


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
 Frame = +1

Query: 175 FASGNPYAETRKN-LILTSETKVIVQGFTGKQGTFHSQQALD-YGTKV----VGGVSPKK 336
           F     + E  KN L L+ E K +V  +   QG     + +  + T +    +  V  KK
Sbjct: 462 FDGEKKHHERLKNRLNLSKEEKELVSSYMKNQGPQKKWENMPLHETSIRINSLFYVDGKK 521

Query: 337 --AGTEHLGKPVFGTVKEAK 390
              GT+ +GK  FGTVK+ K
Sbjct: 522 IDCGTDQIGKGAFGTVKKGK 541


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 297 VKGLLAVEGTLLSSETLNN-HFCFTCKDQIF 208
           +K  + V+G   S  ++N  H+C+ C+D I+
Sbjct: 476 IKNRIQVKGHSFSINSVNTVHYCYQCRDAIW 506


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 297 VKGLLAVEGTLLSSETLNN-HFCFTCKDQIF 208
           +K  + V+G   S  ++N  H+C+ C+D I+
Sbjct: 476 IKNRIQVKGHSFSINSVNTVHYCYQCRDAIW 506


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 453 NGCCSSRGRYINNRGSCSCA-CLCLFD 376
           + C S+ G+  N +G C C  C C FD
Sbjct: 607 DSCLSANGKICNGKGECICGRCRC-FD 632


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 453 NGCCSSRGRYINNRGSCSCA-CLCLFD 376
           + C S+ G+  N +G C C  C C FD
Sbjct: 607 DSCLSANGKICNGKGECICGRCRC-FD 632


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 444  CSSRGRYINNRGSCSCACL 388
            C S    IN  GSC C C+
Sbjct: 1771 CDSMAMCINRMGSCGCKCM 1789


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 297 VKGLLAVEGTLLSSETLNN-HFCFTCKDQIF 208
           +K  + V+G   S  ++N  H+C+ C+D I+
Sbjct: 429 IKNRIQVKGHSFSINSVNTVHYCYQCRDAIW 459


>AF043702-6|AAK21497.2|  306|Caenorhabditis elegans Hypothetical
           protein W03D8.2 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 432 GRYINNRGSCSCACLCLFDCTKHR 361
           G Y++ RGS S   +CL  C KHR
Sbjct: 51  GDYVD-RGSQSVVVMCLLFCMKHR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,899,697
Number of Sequences: 27780
Number of extensions: 236047
Number of successful extensions: 620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)