Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b21
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 194 4e-51
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 194 4e-51
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 35 0.005
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 2.9
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.0
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 5.0
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.7
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 24 8.8
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 194 bits (474), Expect = 4e-51
Identities = 90/138 (65%), Positives = 110/138 (79%)
Frame = +1
Query: 13 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 192
Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64
Query: 193 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 372
GRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G
Sbjct: 65 GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123
Query: 373 ECXPLSKTVRFNVLKVSK 426
+C PLSKTVRFNVL+V K
Sbjct: 124 QCRPLSKTVRFNVLRVVK 141
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 194 bits (474), Expect = 4e-51
Identities = 90/138 (65%), Positives = 110/138 (79%)
Frame = +1
Query: 13 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 192
Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64
Query: 193 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 372
GRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G
Sbjct: 65 GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123
Query: 373 ECXPLSKTVRFNVLKVSK 426
+C PLSKTVRFNVL+V K
Sbjct: 124 QCRPLSKTVRFNVLRVVK 141
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 35.1 bits (77), Expect = 0.005
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 208 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECXPL 387
G+V M +T +R + P ++ +++N V + +GD VTI C P
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 388 SKTVRFNVLKV 420
S T RF ++K+
Sbjct: 64 SATKRFEIIKI 74
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 343 VEIGDIVTIGECXPLSKTVRFNVLKVS 423
V +GDIVTI C + R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 145 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 47
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 28 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 204
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 205 TGV 213
TGV
Sbjct: 222 TGV 224
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 411 NIESNCFGQRXAFADRYNITNLHVPEARRQMY 316
++E NCFG+ + N N+ V E ++ Y
Sbjct: 570 SVEDNCFGEVVTIDLKPNGRNIEVTEENKREY 601
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 58 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 144
R G D++ +N+G+ F+TP + G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,522
Number of Sequences: 5004
Number of extensions: 33265
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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