Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b20
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   4.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.4  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 198 GEEERSHHKCREQTDTKQQDELHGV 272
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 VPNDILEEQLYNSVVVADYDSAVEK 180
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 VPNDILEEQLYNSVVVADYDSAVEK 180
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 EEERSHHKCREQTDTKQQDELH 266
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 EEERSHHKCREQTDTKQQDELH 266
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 426 IVALNIIAQRQSETVALVHKLNRV 355
           +VA+ ++   QS  +  +H++NRV
Sbjct: 355 VVAMKMMHLPQSNKMNRMHRMNRV 378


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 EEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 234
           +EQL  S V ++Y    +   +   E ++  +TN+++
Sbjct: 475 QEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILS 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,669
Number of Sequences: 438
Number of extensions: 1935
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)