Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b17
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR407649-1|CAG28577.1|  150|Homo sapiens COX5A protein.               138   7e-33
BC024240-1|AAH24240.1|  150|Homo sapiens cytochrome c oxidase su...   138   7e-33
M22760-1|AAA99220.1|  150|Homo sapiens cytochrome c oxidase subu...   138   9e-33
AF067635-1|AAC73060.1|   37|Homo sapiens cytochrome c oxidase su...    47   4e-05

>CR407649-1|CAG28577.1|  150|Homo sapiens COX5A protein.
          Length = 150

 Score =  138 bits (335), Expect = 7e-33
 Identities = 63/101 (62%), Positives = 76/101 (75%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  E+DEEFD R+  YFN+ DID WE+RKG+N L   D+VP+PKII AAL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
             VR +E  KDK G    EIYPY+IQE++PTL ELGI TPE
Sbjct: 104 STVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPE 143


>BC024240-1|AAH24240.1|  150|Homo sapiens cytochrome c oxidase
           subunit Va protein.
          Length = 150

 Score =  138 bits (335), Expect = 7e-33
 Identities = 63/101 (62%), Positives = 76/101 (75%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  E+DEEFD R+  YFN+ DID WE+RKG+N L   D+VP+PKII AAL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
             VR +E  KDK G    EIYPY+IQE++PTL ELGI TPE
Sbjct: 104 STVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPE 143


>M22760-1|AAA99220.1|  150|Homo sapiens cytochrome c oxidase subunit
           Va protein.
          Length = 150

 Score =  138 bits (334), Expect = 9e-33
 Identities = 63/101 (62%), Positives = 76/101 (75%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  E+DEEFD R+  YFN+ DID WE+RKG+N L   D+VP+PKII AAL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
             VR +E  KDK G    EIYPY+IQE++PTL ELGI TPE
Sbjct: 104 SLVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPE 143


>AF067635-1|AAC73060.1|   37|Homo sapiens cytochrome c oxidase
           subunit Va protein.
          Length = 37

 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +3

Query: 390 DKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
           DK G    EIYPY+IQE++PTL ELGI TPE
Sbjct: 1   DKAGPH-KEIYPYVIQELRPTLNELGISTPE 30


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,818,889
Number of Sequences: 237096
Number of extensions: 1451245
Number of successful extensions: 2639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)