Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b17
         (484 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09065-1|CAA70286.1|  149|Drosophila melanogaster cytochrome c o...   151   4e-37
BT011037-1|AAR30197.1|  149|Drosophila melanogaster RE42582p pro...   151   5e-37
AE014297-1390|AAN13534.1|  149|Drosophila melanogaster CG14724-P...   151   5e-37
AE014297-1389|AAF54706.1|  149|Drosophila melanogaster CG14724-P...   151   5e-37

>Y09065-1|CAA70286.1|  149|Drosophila melanogaster cytochrome c
           oxidase subunit Vapreprotein protein.
          Length = 149

 Score =  151 bits (367), Expect = 4e-37
 Identities = 68/101 (67%), Positives = 82/101 (81%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP+PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPNPKIIEAGLRASRRVNDIA 91

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI T E
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIE 132


>BT011037-1|AAR30197.1|  149|Drosophila melanogaster RE42582p
           protein.
          Length = 149

 Score =  151 bits (366), Expect = 5e-37
 Identities = 68/101 (67%), Positives = 81/101 (80%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI T E
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIE 132


>AE014297-1390|AAN13534.1|  149|Drosophila melanogaster CG14724-PB,
           isoform B protein.
          Length = 149

 Score =  151 bits (366), Expect = 5e-37
 Identities = 68/101 (67%), Positives = 81/101 (80%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI T E
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIE 132


>AE014297-1389|AAF54706.1|  149|Drosophila melanogaster CG14724-PA,
           isoform A protein.
          Length = 149

 Score =  151 bits (366), Expect = 5e-37
 Identities = 68/101 (67%), Positives = 81/101 (80%)
 Frame = +3

Query: 180 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 359
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 360 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 482
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI T E
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIE 132


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,786,433
Number of Sequences: 53049
Number of extensions: 469632
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)