Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b17
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical...   130   5e-31
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    27   5.4  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical
           protein Y37D8A.14 protein.
          Length = 174

 Score =  130 bits (314), Expect = 5e-31
 Identities = 55/97 (56%), Positives = 77/97 (79%), Gaps = 2/97 (2%)
 Frame = +3

Query: 198 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 377
           ++FDN +  Y NR +IDGWE+RK +++L   D++PDPK+++AAL ACRRVND+ALAVRF+
Sbjct: 42  DKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFL 101

Query: 378 EACKDKCGNKVNE--IYPYIIQEIKPTLTELGIDTPE 482
           EA K KCG + N   +Y YI+++++P L ELGIDTPE
Sbjct: 102 EAIKIKCGAQKNRDTVYAYIVKQVEPVLKELGIDTPE 138


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 198 EEFDNRYEAYFNRKDIDGWEIRKGMNDL-CGMDLVPD 305
           E F+ +  ++   KD+DG+E R+G++D  C   L+ D
Sbjct: 259 ENFEKK-NSFRRHKDMDGYECRRGISDTKCQCHLLQD 294


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 APYLYGDHTEVQWKVMKNSITD 216
           APYL+ +H E+ W V+ + + D
Sbjct: 184 APYLFDEHHEIYWPVVISLLVD 205


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 425 WVDFIHFVSTFVFAGFYKPDCKGIIIDSSACMKGSFD---NLWVGNE 294
           +V+F   +S+F+F  ++   CKG  I S A    + +   +L++GNE
Sbjct: 59  FVNFYILLSSFLFYSYHPLFCKGYSIFSQALESWNINLSMSLYLGNE 105


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 310 RLSKLPFMHADESMIMPLQSGL*KPAKTNVETK*MKSTHTSFKRSSLLS 456
           +L+ +  +H   +M    +  + K  KT ++   +KS H +F RSS  S
Sbjct: 9   KLAMIETVHGHRTMNEVTRGNIQKLVKTGIQES-LKSAHRNFSRSSTFS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,831
Number of Sequences: 27780
Number of extensions: 243453
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)