Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b17
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.98 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 214 DMKHISTEKTLMVGKSAKE*MTSVVWISFPTQRLSKLPFMHADESMIMP 360
           D + I + K+++   SA   +  + W  F TQRL    +++A ES   P
Sbjct: 258 DSRQIQSRKSVIKMLSAVVILFFICWAPFHTQRLL---YVYAQESDYYP 303


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 213 CYRILHHFPLDLRVISVQI 157
           C   LH++PLD +  +V+I
Sbjct: 161 CMMDLHYYPLDSQNCTVEI 179


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 374 YRSLQRQMWKQS 409
           Y++L +QMW Q+
Sbjct: 285 YKTLYKQMWSQN 296


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 447 PTLTELGIDT 476
           PTL ELG DT
Sbjct: 211 PTLEELGFDT 220


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 303 DPKIIKAALHACRRVNDY 356
           +PKII +  ++C   N+Y
Sbjct: 300 EPKIISSLSNSCNYSNNY 317


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 250 VGKSAKE*MTSVVWISFPTQRLSKLPFMHADESMIMPLQSGL 375
           +G+ A     S+  ISFP + L +L  M     ++  L SG+
Sbjct: 82  LGRLANPTPQSITLISFPGELLMRLLKMFILPLIVSSLISGM 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,044
Number of Sequences: 438
Number of extensions: 2730
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)