Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b16
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 49 6e-07
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 39 6e-04
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 38 8e-04
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 38 0.001
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 37 0.002
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 32 0.052
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 32 0.052
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 31 0.12
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 28 0.85
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 1.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 2.0
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 3.4
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 3.4
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 4.5
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 4.5
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 7.9
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 7.9
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 7.9
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +2
Query: 326 WAAEHNKLDTLRELLVAKPGLVHSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSE 505
+AA +L ++ L P L+ +D G TPLHRAA + + L+S A +++
Sbjct: 113 YAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDS 172
Query: 506 LGWTPLHSA 532
G+TPLH A
Sbjct: 173 YGFTPLHFA 181
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 PGLVHSRDSDGYTPLHRAAYSNHLDAISLLLSF-GAKVSSKSELGWTPLHSACN 538
P +++ D D TPLH A ++ I LL K K E GWTPL + N
Sbjct: 27 PNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISIN 80
Score = 29.9 bits (64), Expect = 0.28
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 329 AAEHNKLDTLRELLVAKPGLVHSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSEL 508
AA K+ ++ L+ + L ++ DS G+TPLH A H D L+ GA K
Sbjct: 148 AAAVGKIQVVKYLISQRAPL-NTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKDSE 206
Query: 509 GWTPL 523
T L
Sbjct: 207 NHTAL 211
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 38.7 bits (86), Expect = 6e-04
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 329 AAEHNKLDTLRELLVAKPGLVHSRDSD-GYTPLHRAAYSNHLDAISLLLS 475
A NK +R LL K V +D + GYT LHRA Y +L+A SLLLS
Sbjct: 59 AVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVGNLEAASLLLS 108
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 38.3 bits (85), Expect = 8e-04
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 392 HSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPL 523
++ D +GYTP+H A H D + +L+ G ++ + + G TPL
Sbjct: 31 NAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 431 AAYSNHLDAISLLLSFGAKVSSKSELGWTPLHSACNWNNYHIVARLL 571
AA D + L G ++ E G+TP+H+A ++ + ++ L+
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILV 57
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 356 LRELLVAKPGLVHSRDSDGYTPL 424
L ++LV + G ++ RD DG TPL
Sbjct: 52 LLKILVERGGDINIRDQDGETPL 74
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 401 DSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPL-HSACNWNNY 550
D DG+T LH A H++ I LLL A + + L TPL S NNY
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNY 295
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +2
Query: 389 VHSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPL 523
V+ RD+ GYTPLH A+ +H D LLS GAK G P+
Sbjct: 888 VNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPI 932
Score = 33.5 bits (73), Expect = 0.023
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 401 DSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPLHSACNWNNYHIVARLLA 574
+ G + LH A +A + L + G V+ + LG+TPLH A +++ I LL+
Sbjct: 859 NESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLS 916
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.052
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 389 VHSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPLH 526
V RD +TPL A+Y + + LL +GA V + E TPLH
Sbjct: 127 VDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLH 172
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 320 VLWAAEHNKLDTLRELLVAKPGLVHSRDSDGYTPLHRAAYSNHLDAISLLLSFG 481
++WA+ H + + L+ V + D D TPLH + +L + L+L G
Sbjct: 138 LMWASYHGN-EPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 32.3 bits (70), Expect = 0.052
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 329 AAEHNKLDTLRELLV--AKPGLVHSRDS-DGYTPLHRAAYSNHLDAISLLLSFGAKVSSK 499
A +N+ + ++ LL A P +RD + +TPL A+ + + +S+L++ GA V
Sbjct: 374 AVRYNRPECVKMLLKLGANPS---ARDFLNSWTPLMLASATGLSEIVSILVASGASVDEV 430
Query: 500 SELGWTPLHSACNWNNYHIVARL 568
GWT + A H+ +L
Sbjct: 431 DSSGWTAMEQAVVRGYLHLADKL 453
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 398 RDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELG-WTPLHSACNWNNYHIVARLL 571
RD TPL A NH++A+ LLS K ++ ++ G PL C +Y ++ L
Sbjct: 295 RDVMHDTPLTLAIKGNHVEALHALLSAQDKETTSTKPGPVPPLVLTCCVGDYDLIVEEL 353
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 401 DSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGWTPL 523
D DG+T LH AA +L+ + LL GA V + + L T L
Sbjct: 234 DEDGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSL 274
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 28.3 bits (60), Expect = 0.85
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 557 QYDN--YSNYMQSVMASNQVQIYC*PLLQNLAVKILHPN 447
Q DN +++ +QS+ Q I P+ Q++A+K+LHPN
Sbjct: 272 QQDNSYFTSMLQSI-GFRQKNISDAPVTQDVAIKVLHPN 309
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 365 LLVAKPGLVHSRDSDGYTPLHRAAYSNHLDAISLLLSFGAKVSSKSELGW 514
LL A P H+ G + YS+ + + LLL S SEL W
Sbjct: 456 LLAADPRNYHALLGKGLVQIENEQYSDAVKTLGLLLDDHENDPSLSELSW 505
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 110 TNRLRRV*LIIKMSDEDDSDVEAKYFKE 193
T+R RR +I SD+D+S+ E + KE
Sbjct: 184 THRFRRYGAVISDSDDDESNTEQDHSKE 211
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 146 MSDEDDSDVEAKYFKEISDEIQTLKKNPETS 238
+++E +SD + +Y K++ + + KN ETS
Sbjct: 81 LNEEKESDTQTRYLKQLINICNSPSKNHETS 111
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 143 KMSDEDDSDVEAKYFKEISDEIQTLKKNPETSGM 244
K++D D D+E KYF+E+ E + +K+ +++G+
Sbjct: 90 KLNDSSD-DIEGKYFEELLAE-EDEEKDKDSAGL 121
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 134 LIIKMSDEDDSDVEAKYFKEISDEIQTLKKNPET 235
L ++ + ED+ D+ + ++ +QTL K P T
Sbjct: 681 LNVESNAEDEEDISYRTMDQLDPNLQTLSKLPRT 714
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 347 LDTLRELLVAKPGLVHSRDSDGYTPLHRAAYSN 445
L+ +R L + P +H RDS Y +YSN
Sbjct: 231 LNVMRALCTSHPRGIHWRDSRSYLLSQEISYSN 263
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 244 HTRRFWIFFQSLYFITYFFEIF 179
+ +R W FF + ++++FFE F
Sbjct: 55 YPKRNWWFFIKMRYLSFFFEFF 76
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 161 DSDVEAKYFKEISDEIQTLKKNPETSGMFVSGW 259
D+D K +++ I TLK NP + +S W
Sbjct: 452 DTDYTNKGVDQLAQVISTLKLNPYDRRIILSAW 484
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 488 PLLQNLAVKILHPNDLNKQLDVVECNHRSLLNE 390
PL + ++ +HP+ L+ EC+H NE
Sbjct: 255 PLKAHYVLRSVHPSPLSAHRGFFECHHFKKTNE 287
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Frame = -1
Query: 346 LIVFCSP*YMINRICFRIFHQINILICVVPTR-------NKH--TRRFWIFFQSLYFI-- 200
L++ C P + + + F +F + + CVV +KH + I SL+ I
Sbjct: 243 LLLVCIPIWTLKHMLFGLFQVLGVQSCVVIVTKGLMYLFDKHIDATGYEIEASSLFVIGN 302
Query: 199 -TYFFEIFCFNIGII 158
+F+E+ FNI +I
Sbjct: 303 FLFFYEMGLFNISVI 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,293
Number of Sequences: 5004
Number of extensions: 44047
Number of successful extensions: 150
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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