Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b07
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   2.8  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   3.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   8.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    24   8.7  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   8.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -3

Query: 403 IAYNINKSNNLLQAVIGTTTFSGVRQLLSF*FQPTCLHFQGSLTFCEFCRRVVR 242
           + Y+ +KSN   ++ IG     G        F+  C+++       EF R V +
Sbjct: 438 LMYSADKSNQTAKSFIGVLDIYGFEHFKKNSFEQFCINYANEKLQQEFYRHVFK 491


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 205 TDSGGKIYMGTERSSLRTCKGTSWGDQGRP 116
           +DS G+I     R+     KG ++GD  RP
Sbjct: 240 SDSTGEIRKKISRAQTDNIKGITYGDSNRP 269


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 47  LKRLSQIIKCFQSFLDLLTPS 109
           +  LSQ  KCF+  ++LL PS
Sbjct: 80  IAELSQRQKCFEYLMELLCPS 100


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -3

Query: 262 FCRRVVRKLRWRQPSNAKATDSGGKIYMGTERSSLRTC-KGTSWGDQGRPTS 110
           FC   +RKL W   S+ K+      I M           +G  WG  G+P S
Sbjct: 306 FCNNFIRKLSW--SSSTKSNYVSLLIAMVVRELVFAILPRGCIWGFNGKPLS 355


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 339 VVFGSFFPSDFSPLAYIFR 283
           + FGS FPS   PLA + R
Sbjct: 302 IKFGSHFPSKTVPLALVIR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,082
Number of Sequences: 5004
Number of extensions: 36002
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)