Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b07
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical...    27   5.8  
AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical...    27   5.8  
AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical ...    27   5.8  

>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +1

Query: 214 RYWAA---AIVISSPLFYKIHKMSNSPEN 291
           +YWA      +I   L  K+H +S SPEN
Sbjct: 139 KYWARNRLEFIIDDQLISKVHVLSKSPEN 167


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 SDAPGRPMKFPYTFSAKIAQF 177
           S+ PG P +FP  F A IAQF
Sbjct: 79  SEFPGFPSEFPAGFPADIAQF 99


>AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.16 protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 351 LLHLVVFGSFFPSDFSPLAYIFRGV*HFVNFVEEW*GNYDGGSPVTPK 208
           LL     G   P D S    I   + ++   VE+W  +Y    P  PK
Sbjct: 274 LLECFAMGFLHPKDESDSKKIIEKITYYTTLVEQWEKHYLNDRPYWPK 321


>AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.15 protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 351 LLHLVVFGSFFPSDFSPLAYIFRGV*HFVNFVEEW*GNYDGGSPVTPK 208
           LL     G   P D S    I   + ++   VE+W  +Y    P  PK
Sbjct: 274 LLECFAMGFLHPKDESDSKKIIEKITYYTTLVEQWEKHYLNDRPYWPK 321


>AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical
           protein F45D11.14 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 351 LLHLVVFGSFFPSDFSPLAYIFRGV*HFVNFVEEW*GNYDGGSPVTPK 208
           LL     G   P D S    I   + ++   VE+W  +Y    P  PK
Sbjct: 281 LLECFAMGFLHPKDESDSKKIIEKITYYTTLVEQWEKHYLNDRPYWPK 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,890,329
Number of Sequences: 27780
Number of extensions: 205225
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)