Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b06
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    30   0.79 
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    27   5.6  

>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 237 RKYYSIIRGVRLRFAQIQHSKLILKNG 317
           +KY+SI++G ++    + +SKLI KNG
Sbjct: 786 QKYWSILKGFQIIIGSVLNSKLINKNG 812


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 266 TLEICTNSA**ANFEEWVTS*EVPSCSA*EEKMTKACH*TKADNHKGHTGMAWCC 430
           T+ I TN A   N ++ + +  V SC   E  M KAC   +ADNH+  + + + C
Sbjct: 192 TVPITTNHA---NQDKLLNT-PVHSCDIFESAMEKACPNLEADNHRDESAIMYEC 242


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 490 APVPRSLQPDPAS*LALPHITTP 422
           APVP +L  DPA  + +P+I +P
Sbjct: 274 APVPATLPSDPAPEVRIPYIPSP 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,363
Number of Sequences: 27780
Number of extensions: 179816
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)