Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b05
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 32 0.075
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 31 0.13
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 30 0.30
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.40
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 8.7
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 25 8.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.7
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 8.7
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 31.9 bits (69), Expect = 0.075
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +1
Query: 163 RITNSRCLVLCVILTFVMGCYLASLPIEEEKPALLKQSVAEIPTINTNKKRLA-IIVPFR 339
+I++++ ++CV +V+ CY + ++EE + Q + + + T+ L + PF
Sbjct: 218 KISSAQVPIVCVSPKWVLACYSSKYLVDEEMYLVDPQDILQTKCLQTDDSELLNPLDPFT 277
Query: 340 DRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLIN 471
D ++++ P F Q FV DS+ FN S ++
Sbjct: 278 D--TQMIQ-DPSDAFFFDTQAENLEPFVNGSPDSHCFNADSFLD 318
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 306 QEASSNHRSVPGPLRGAPRVRSSHDRLPEETRN 404
+EA H S P P + VRSS+DR+P + N
Sbjct: 58 EEAFYQHLSTPDPGNDSGHVRSSNDRIPSTSSN 90
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 30.7 bits (66), Expect = 0.17
Identities = 24/101 (23%), Positives = 46/101 (45%)
Frame = +1
Query: 145 ISLMGYRITNSRCLVLCVILTFVMGCYLASLPIEEEKPALLKQSVAEIPTINTNKKRLAI 324
I ++G + +R LC G A LPI+E +K + +I T+N + L++
Sbjct: 199 IYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDE----YIKITDRKILTVNQVFEILSL 254
Query: 325 IVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNR 447
+ +RD + +E +P L + + F + + SN+
Sbjct: 255 WLEYRDWEKAFMEVIPKRKGILLKSDESFDVSEDTRSQSNQ 295
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 29.9 bits (64), Expect = 0.30
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +1
Query: 166 ITNSRCLVLCVILTFVMGCYLASLPIEEEKPALLKQSVAEIPTINTNKKRLAII 327
+T+ RCL L V LTF++G Y LP E +L Q+ + I T KK L I
Sbjct: 57 VTSLRCLQLFVHLTFLLGVY-TQLPKE-----MLSQAKIKALPIYTPKKNLVQI 104
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 403 IPFHIFVVQQKDSNRFNRASLINVGFLQTRN-NFEYMAMHDVDLLPLNDNLKYEYPEAGP 579
+P ++ +Q KD+ +RA + + FL+ RN N E+ ++ +D N NL++ P
Sbjct: 516 LPVVLYSLQSKDTEVRSRALNLILTFLELRNENLEFSIIYGMDDND-NKNLRWLSPVETK 574
Query: 580 YHIS 591
Y+ S
Sbjct: 575 YYCS 578
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/65 (24%), Positives = 21/65 (32%)
Frame = +3
Query: 282 RNSYH*YKQEASSNHRSVPGPLRGAPRVRSSHDRLPEETRNSIPHLCGSTEGQQPFQQSF 461
RN Y N GP P +R+SH + R I L + P +S
Sbjct: 308 RNEYLRRVTSLVPNQPEYTGPYTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKST 367
Query: 462 IDKCW 476
W
Sbjct: 368 KSSKW 372
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSN 444
K+++ I P R+ E L F HM E+ F++ D N
Sbjct: 97 KEKVLICAPLRNAAEHLNMFFGHMNNLTYPHELIDLAFLISDTDDN 142
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 226 LASLPIEEEKPALLKQSVAEIPTINTNKKRLAIIVPFRDRFE 351
L S+P+ E+ LK V+E +I++ K + +DR E
Sbjct: 295 LDSIPMNEQLKVSLKPLVSESSSISSKKLDAPLAKSIQDRLE 336
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 412 HIFVVQQKDSNRFNRASLINVGFLQTRNNFEYMAMHD 522
HI + ++DS + +SL +V + N Y+A+++
Sbjct: 206 HILQIDEQDSQLHSISSLQHVSHISISPNARYLALYE 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,275
Number of Sequences: 5004
Number of extensions: 46920
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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