Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28b05
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467...    30   1.2  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    27   8.8  

>04_04_1683 +
           35345506-35345581,35346171-35346343,35346706-35346739,
           35346919-35347055,35347356-35347422,35347645-35347744,
           35348375-35348538,35349023-35349069,35349177-35349224,
           35349463-35349976,35350190-35350278,35350472-35350549,
           35350972-35351019
          Length = 524

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 321 NHRSVPGPLRGAPRVRSSHDRLPE---ETRNSIP---HLCGSTEGQQPFQQS 458
           NH +V G  +G P+  +S +  P     T  ++P      GSTEG +P Q S
Sbjct: 348 NHANVNGNSQGTPQTETSSNHTPPPSFPTNTAVPPPFSFTGSTEGNRPQQTS 399


>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
            29268651-29268719,29268803-29268946,29269775-29270011,
            29270897-29270998,29271131-29271396,29271766-29273410,
            29274449-29275018
          Length = 1379

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 393  ETRNSIPHLCGSTEGQQPFQQSFIDKCWIPADS*QFRIHGDARR*SSTFER 545
            E  NS  H   S +GQ P ++SF+ +      S     H D+RR  S  ER
Sbjct: 1198 EQENSRDHTVSSKKGQNPQRESFVKQAEEDPMS-DDENHEDSRRGRSKLER 1247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,778,422
Number of Sequences: 37544
Number of extensions: 284771
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)