Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b05
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 115 2e-26
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 115 2e-26
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 66 2e-11
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 66 2e-11
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 66 2e-11
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 62 3e-10
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 62 3e-10
Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF000261-1|AAB52922.1| 505|Caenorhabditis elegans Hypothetical ... 28 6.0
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 115 bits (277), Expect = 2e-26
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Frame = +1
Query: 175 SRCLVLCVILTFVMGCY-LASLPIEEEKPALLKQSVAEIPTINTNKKRLAIIVPFRDRFE 351
+R ++ IL + CY L L ++ E L + + T+ +L +IVP+RDR E
Sbjct: 5 TRLILSGTILISLAACYFLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLE 64
Query: 352 ELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQT-RNNFEYMAMHDVD 528
EL EF PHM+ FL Q + HI ++ Q D RFNRASLINVG+ + R +YM M+DVD
Sbjct: 65 ELREFSPHMSKFLHNQNVSHHILIINQTDPLRFNRASLINVGWNEADRLGCDYMVMNDVD 124
Query: 529 LLPLNDNLKYEYPEAGPY-HISSPDTH 606
LLP+N + Y++P G HI+SP H
Sbjct: 125 LLPVNPEVPYDFPGIGVIRHITSPQYH 151
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 115 bits (277), Expect = 2e-26
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Frame = +1
Query: 175 SRCLVLCVILTFVMGCY-LASLPIEEEKPALLKQSVAEIPTINTNKKRLAIIVPFRDRFE 351
+R ++ IL + CY L L ++ E L + + T+ +L +IVP+RDR E
Sbjct: 5 TRLILSGTILISLAACYFLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLE 64
Query: 352 ELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQT-RNNFEYMAMHDVD 528
EL EF PHM+ FL Q + HI ++ Q D RFNRASLINVG+ + R +YM M+DVD
Sbjct: 65 ELREFSPHMSKFLHNQNVSHHILIINQTDPLRFNRASLINVGWNEADRLGCDYMVMNDVD 124
Query: 529 LLPLNDNLKYEYPEAGPY-HISSPDTH 606
LLP+N + Y++P G HI+SP H
Sbjct: 125 LLPVNPEVPYDFPGIGVIRHITSPQYH 151
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQ 486
+ R+AIIVP+RDR L + ++ + L +Q++ + IF+V+Q + FNR L+NVG+
Sbjct: 147 RHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDV 206
Query: 487 TRNNFEYMA--MHDVDLLPLNDNLKYEYPEAGPYHIS 591
+ + HDVDLLP +D Y P P H+S
Sbjct: 207 ASRLYPWQCFIFHDVDLLPEDDRNLYTCP-IQPRHMS 242
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQ 486
+ R+AIIVP+RDR L + ++ + L +Q++ + IF+V+Q + FNR L+NVG+
Sbjct: 147 RHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDV 206
Query: 487 TRNNFEYMA--MHDVDLLPLNDNLKYEYPEAGPYHIS 591
+ + HDVDLLP +D Y P P H+S
Sbjct: 207 ASRLYPWQCFIFHDVDLLPEDDRNLYTCP-IQPRHMS 242
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQ 486
+ R+AIIVP+RDR L + ++ + L +Q++ + IF+V+Q + FNR L+NVG+
Sbjct: 147 RHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDV 206
Query: 487 TRNNFEYMA--MHDVDLLPLNDNLKYEYPEAGPYHIS 591
+ + HDVDLLP +D Y P P H+S
Sbjct: 207 ASRLYPWQCFIFHDVDLLPEDDRNLYTCP-IQPRHMS 242
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQ 486
+ ++A+I+P+R+R L + + L+RQ + F V +Q ++ FN+ ++N F+
Sbjct: 158 RDKIAVIIPYRERQTHLTRLIDFLIPILQRQRLDFRFIVTEQYGNDLFNKGRIMNAAFIF 217
Query: 487 TRN-NFEYMAMHDVDLLPLNDNLKYEYPEAGPYHISS 594
+ + + HDVD+ P +D Y P GP H+ +
Sbjct: 218 AESLGVDCVVFHDVDMFPQDDRNPYSCP-PGPRHLGA 253
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +1
Query: 307 KKRLAIIVPFRDRFEELLEFVPHMTAFLKRQEIPFHIFVVQQKDSNRFNRASLINVGFLQ 486
+ ++A+I+P+R+R L + + L+RQ + F V +Q ++ FN+ ++N F+
Sbjct: 158 RDKIAVIIPYRERQTHLTRLIDFLIPILQRQRLDFRFIVTEQYGNDLFNKGRIMNAAFIF 217
Query: 487 TRN-NFEYMAMHDVDLLPLNDNLKYEYPEAGPYHISS 594
+ + + HDVD+ P +D Y P GP H+ +
Sbjct: 218 AESLGVDCVVFHDVDMFPQDDRNPYSCP-PGPRHLGA 253
>Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical
protein T12A7.2b protein.
Length = 367
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 485 CRNPTFINEALLKRLLSFC*TTKMWNGISCLFR 387
C P +N+ L C T W G C+FR
Sbjct: 103 CETPVCMNDGYFNHTLGRCVCTSNWVGEHCIFR 135
>Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical
protein T12A7.2a protein.
Length = 483
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 485 CRNPTFINEALLKRLLSFC*TTKMWNGISCLFR 387
C P +N+ L C T W G C+FR
Sbjct: 103 CETPVCMNDGYFNHTLGRCVCTSNWVGEHCIFR 135
>AF000261-1|AAB52922.1| 505|Caenorhabditis elegans Hypothetical
protein F19B10.11 protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 262 LLKQSVAEIPTINTNKKRLAIIVPFRDRFEELLEFVP 372
L+KQ + E P + ++ + P D FEE++ F P
Sbjct: 333 LIKQELVEDPNVPSSSTPVVSRDPIDDEFEEIIPFNP 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,568
Number of Sequences: 27780
Number of extensions: 267760
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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