Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28b03
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2 ... 52 9e-08
Z36753-1|CAA85340.2| 193|Caenorhabditis elegans Hypothetical pr... 46 1e-05
U39997-1|AAA81096.1| 204|Caenorhabditis elegans Calexcitin prot... 43 7e-05
M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light ch... 31 0.18
M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light ch... 31 0.18
AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light ... 31 0.18
AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light ... 31 0.18
Z81568-13|CAH10811.1| 153|Caenorhabditis elegans Hypothetical p... 29 0.71
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 29 0.94
L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z70753-8|CAA94763.1| 137|Caenorhabditis elegans Hypothetical pr... 27 2.9
U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical pr... 26 6.6
U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical pr... 26 8.7
>AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2
protein.
Length = 189
Score = 52.4 bits (120), Expect = 9e-08
Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Frame = +1
Query: 4 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK--SSVSFAEFQE 168
+++F+L D S D +D E+ V FG+++ +++ F + + +G+ +S+ +F
Sbjct: 108 EYMFKLLDESGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLINSIDKKKFHV 167
Query: 169 LFKEYFASEDVNAPGNFVFGK 231
L+K++F SED ++PGN++ GK
Sbjct: 168 LWKQFFHSEDPSSPGNWLLGK 188
>Z36753-1|CAA85340.2| 193|Caenorhabditis elegans Hypothetical
protein T09A5.1a protein.
Length = 193
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Frame = +1
Query: 4 KFIFQLEDAS----NDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK--SSVSFA 156
+++F+L D S D +D E+ V FG+++ +++ F + + +G+ +S+
Sbjct: 108 EYMFKLLDESVSFSGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLINSIDKK 167
Query: 157 EFQELFKEYFASEDVNAPGNFVFGK 231
+F L+K++F SED ++PGN++ GK
Sbjct: 168 KFHVLWKQFFHSEDPSSPGNWLLGK 192
>U39997-1|AAA81096.1| 204|Caenorhabditis elegans Calexcitin protein
1 protein.
Length = 204
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +1
Query: 7 FIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAE-----FQEL 171
F+F+L D S DG +D E++ +++G D++E +AF K S K + +
Sbjct: 122 FMFKLFDVSCDGVMDLAEYTDGMSTYGFDQSECDAAFHKFSVDKKGQYVPQMKPETWNTY 181
Query: 172 FKEYFASEDVNAPGNFVFGKTSF 240
F + F S + + GN +FG F
Sbjct: 182 FHQLFYSTNKSDVGNHLFGIIDF 204
>M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light chain
2 protein.
Length = 170
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 4 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 183
K F + D + DG ID + +YAS G A + + + ++F F LF E
Sbjct: 30 KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88
Query: 184 FASEDVNA 207
D A
Sbjct: 89 LTGTDPEA 96
>M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light chain
1 protein.
Length = 170
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 4 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 183
K F + D + DG ID + +YAS G A + + + ++F F LF E
Sbjct: 30 KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88
Query: 184 FASEDVNA 207
D A
Sbjct: 89 LTGTDPEA 96
>AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light
chain protein 1 protein.
Length = 170
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 4 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 183
K F + D + DG ID + +YAS G A + + + ++F F LF E
Sbjct: 30 KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88
Query: 184 FASEDVNA 207
D A
Sbjct: 89 LTGTDPEA 96
>AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light
chain protein 2 protein.
Length = 170
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 4 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 183
K F + D + DG ID + +YAS G A + + + ++F F LF E
Sbjct: 30 KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88
Query: 184 FASEDVNA 207
D A
Sbjct: 89 LTGTDPEA 96
>Z81568-13|CAH10811.1| 153|Caenorhabditis elegans Hypothetical
protein K08E3.10 protein.
Length = 153
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 10 IFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS---VSFAEFQELFKE 180
+F D DG IDS++ + + L+ EA A ++SK ++S ++ EF ++K+
Sbjct: 13 VFHFHDTLGDGKIDSKQLPTALRAMMLNPTEALLA--EVSKARTSGARITVEEFIPIYKK 70
Query: 181 YFAS 192
A+
Sbjct: 71 VEAA 74
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 29.1 bits (62), Expect = 0.94
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 41 GPSTARNSLRSTHLLV*TRLKLHQLFRSYPKASHLSPSLNSRNCSKNISLLRM*TPLETL 220
G S A N LRS HL R ++H F P + L P ++ + S ++++ TP+ T+
Sbjct: 800 GASEAANHLRSVHLF--ARPRIHLQFMK-PSTNDLIPITSAPSDSLALAIIPSTTPVTTI 856
>L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical
protein C50C3.5 protein.
Length = 202
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 10 IFQLEDASNDGSIDSEEFSSVYASFGLD-KAEAASAFQKLS--KGKSSVSFAEF 162
IFQL D G+I S E + + G+D + A + S G + F EF
Sbjct: 55 IFQLMDDDGSGTISSSEVAKMLNELGIDVSPKVVQAVMRSSDVSGDGQIDFEEF 108
>Z70753-8|CAA94763.1| 137|Caenorhabditis elegans Hypothetical
protein F40F9.8 protein.
Length = 137
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 25 DASNDGSIDSEEFSSVYASFGLD--KAEAASAFQKLSKGKSSVSF 153
D +DG I++++ S V SFGL+ + E ++ +K VSF
Sbjct: 3 DEDSDGLIETDDVSHVLRSFGLNPSQTELQLVSEQTAKKNGRVSF 47
>U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical
protein K04C2.2 protein.
Length = 990
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 130 KGKSSVSFAEFQELFKEYFASEDVNAPGNFV 222
K S+ EFQ LF+ Y + + P NFV
Sbjct: 801 KSMSAGVKTEFQSLFENYLKNVEGKVPSNFV 831
>U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical
protein C16H3.1 protein.
Length = 211
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 40 GSIDSEEFSSVYASF---GLDKAEAASAFQKLSKGK-SSVSFAEF 162
G++D E+F +YAS G K A F+ + + + +V+F +F
Sbjct: 56 GTVDLEQFQLIYASIFPNGDSKGYAELVFKNIDQNRVGTVTFLDF 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,055
Number of Sequences: 27780
Number of extensions: 114349
Number of successful extensions: 345
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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