Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a24
(178 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 28 0.14
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 0.33
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 1.3
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 23 4.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 23 5.4
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 23 7.1
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 22 9.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 22 9.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 22 9.4
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 22 9.4
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 22 9.4
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 28.3 bits (60), Expect = 0.14
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 104 FSRGKNGKTVGTPLQHVSREVEWFQIWALIVNKP 3
+S KN TVG LQ ++ V W I LIVN+P
Sbjct: 199 YSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEP 231
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 0.33
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 71 CQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
C + F S +I ++ + + E G+R ++C+NN++
Sbjct: 422 CVVAFEFSSEEIPSNLSNY-FQEVGDRTIECLNNIS 456
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 124 LCYSSHYFQGGRTEKQLARRSNMFLAK 44
LC S Y+Q TE + RSN+ + K
Sbjct: 1456 LCKGSFYYQMRNTEDMVISRSNLDIQK 1482
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 44 LREKHVGAACQLFF 85
LREK VG C LF+
Sbjct: 336 LREKDVGTGCGLFY 349
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 59 VGAACQLFFRSSPLKIVRGIAQ 124
V + QLFF S PL+ + G+ Q
Sbjct: 336 VPCSIQLFFDSVPLEKINGLEQ 357
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 98 RGKNGKTVGTPLQHVSREVEWFQI 27
RG+N VG + + E+EW +I
Sbjct: 61 RGENVAMVGLVNEELDSEIEWTKI 84
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 9 IYNQCPNLKPFNFARN 56
+YN CP K NF +N
Sbjct: 206 MYNACPVFKDNNFHKN 221
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 105 IFKGEERKNSWHAAPTCFSRS*MVSDLGIDCK 10
+ KG ERK+ PTC + + G CK
Sbjct: 459 LLKGHERKSCSDPIPTCENICGKLLSCGHRCK 490
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 123 SSCMTKPAKGISTASTT 173
++C ++P + IST STT
Sbjct: 577 TTCSSRPEETISTVSTT 593
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 9 IYNQCPNLKPFNFARNMLERRANCFSVL 92
+Y+ K F A+N+ A+CFSVL
Sbjct: 303 VYHNSLQTKEF-VAKNLTGGHASCFSVL 329
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 142 GFVIHELCYSSHYFQGGRTEKQLAR 68
G VI E+C +H F+ GR+ +L R
Sbjct: 213 GCVIFEICMLTHPFE-GRSYLELQR 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 752,534
Number of Sequences: 5004
Number of extensions: 11436
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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