Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a24
(178 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 44 1e-05
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 38 9e-04
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 26 3.7
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 26 3.7
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 25 6.5
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 25 6.5
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 25 8.6
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 25 8.6
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 32 ETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNV 175
E + R++ +G++ ++ PL IV G Q++YDE G+RYLDC +
Sbjct: 68 EILAKRKQFLGSSV-FYYYQKPLNIVEGKMQYLYDENGKRYLDCFGGI 114
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 38.3 bits (85), Expect = 9e-04
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 83 FRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
F S PL IV G Q+++DE G RYLD +A
Sbjct: 60 FYSKPLNIVEGKMQYLFDERGRRYLDAFAGIA 91
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 92 KNGKTVGTPLQHVSREVEW 36
++GK VG PL+ ++ ++EW
Sbjct: 177 ESGKFVGQPLEGITSDIEW 195
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 110 RGIAQFMYDETGERYLDCINNVA 178
R ++++DE G RYLD +A
Sbjct: 94 RDYHKYLFDEDGRRYLDAFGGIA 116
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 150 LSPVSSYMNCAIPRTIFKGEERKNSWHAAPTCFSRS*MVSDLGI 19
L+PV+ A+ RTIF E K + A P+ + +G+
Sbjct: 393 LTPVALMEGGALARTIFGNEPTKPDYSAVPSAVFSQPPIGQVGL 436
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 95 PLKIVRGIAQFMYDETGERYLDCI 166
PL I R ++YD G++YLD +
Sbjct: 511 PLVIERSEGSYVYDIDGKKYLDSL 534
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 95 PLKIVRGIAQFMYDETGERYLDCI 166
PL I R ++YD G++Y+D +
Sbjct: 122 PLVIDRSEGSYVYDINGKKYIDAL 145
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 134 DETGERYLDCINNVA 178
DE+G+RY+D IN V+
Sbjct: 168 DESGQRYIDAINCVS 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,700,520
Number of Sequences: 37544
Number of extensions: 71329
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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