Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a24
(178 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022526-1|AAH22526.1| 499|Homo sapiens alanine-glyoxylate amin... 77 1e-14
AK091888-1|BAC03766.1| 499|Homo sapiens protein ( Homo sapiens ... 77 1e-14
AJ298293-1|CAC22253.1| 493|Homo sapiens alanine:glyoxylate amin... 77 1e-14
AC097473-1|AAY40946.1| 499|Homo sapiens unknown protein. 77 1e-14
BC110335-1|AAI10336.1| 450|Homo sapiens alanine-glyoxylate amin... 69 3e-12
BC037567-1|AAH37567.1| 450|Homo sapiens alanine-glyoxylate amin... 69 3e-12
BC146759-1|AAI46760.1| 1523|Homo sapiens slit homolog 3 (Drosoph... 27 8.2
AY358884-1|AAQ89243.1| 1523|Homo sapiens SLIT3 protein. 27 8.2
AB017169-1|BAA35186.1| 1523|Homo sapiens Slit-3 protein protein. 27 8.2
AB011538-1|BAA32466.2| 1559|Homo sapiens MEGF5 protein. 27 8.2
>BC022526-1|AAH22526.1| 499|Homo sapiens alanine-glyoxylate
aminotransferase 2-like 1 protein.
Length = 499
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 26 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
K +T+ LR+KH+G +C++FF S P+KIVR Q+M+DE GE+YLDCINNVA
Sbjct: 7 KRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA 57
>AK091888-1|BAC03766.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ34569 fis, clone KIDNE2008069, weakly similar to
PROBABLE AMINOTRANSFERASE T01B11.2 (EC 2.6.1.-). ).
Length = 499
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 26 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
K +T+ LR+KH+G +C++FF S P+KIVR Q+M+DE GE+YLDCINNVA
Sbjct: 7 KRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA 57
>AJ298293-1|CAC22253.1| 493|Homo sapiens alanine:glyoxylate
aminotransferase 2 homolog 1, splice form 1 protein.
Length = 493
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 26 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
K +T+ LR+KH+G +C++FF S P+KIVR Q+M+DE GE+YLDCINNVA
Sbjct: 7 KRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA 57
>AC097473-1|AAY40946.1| 499|Homo sapiens unknown protein.
Length = 499
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 26 KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
K +T+ LR+KH+G +C++FF S P+KIVR Q+M+DE GE+YLDCINNVA
Sbjct: 7 KRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA 57
>BC110335-1|AAI10336.1| 450|Homo sapiens alanine-glyoxylate
aminotransferase 2-like 2 protein.
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = +2
Query: 23 PKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
PK++T+ LR++ + ++C+LFF P+KIVR Q+MYDE G Y+DCI+NVA
Sbjct: 7 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVA 58
>BC037567-1|AAH37567.1| 450|Homo sapiens alanine-glyoxylate
aminotransferase 2-like 2 protein.
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = +2
Query: 23 PKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
PK++T+ LR++ + ++C+LFF P+KIVR Q+MYDE G Y+DCI+NVA
Sbjct: 7 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVA 58
>BC146759-1|AAI46760.1| 1523|Homo sapiens slit homolog 3
(Drosophila) protein.
Length = 1523
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 20 MPKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQF 127
MPK T++L H+ C L + S L+ R + QF
Sbjct: 204 MPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQF 239
>AY358884-1|AAQ89243.1| 1523|Homo sapiens SLIT3 protein.
Length = 1523
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 20 MPKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQF 127
MPK T++L H+ C L + S L+ R + QF
Sbjct: 204 MPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQF 239
>AB017169-1|BAA35186.1| 1523|Homo sapiens Slit-3 protein protein.
Length = 1523
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 20 MPKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQF 127
MPK T++L H+ C L + S L+ R + QF
Sbjct: 204 MPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQF 239
>AB011538-1|BAA32466.2| 1559|Homo sapiens MEGF5 protein.
Length = 1559
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 20 MPKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQF 127
MPK T++L H+ C L + S L+ R + QF
Sbjct: 240 MPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQF 275
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,818,288
Number of Sequences: 237096
Number of extensions: 402781
Number of successful extensions: 954
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 76,859,062
effective HSP length: 38
effective length of database: 67,849,414
effective search space used: 1356988280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -