Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a24
         (178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    53   3e-08
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    53   3e-08
Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    29   0.44 
U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF000263-15|AAG00018.1|  416|Caenorhabditis elegans Hypothetical...    26   4.1  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +2

Query: 26  KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNV 175
           K E ++ R+  +G+ CQ+F+   P  + R   Q++YDE   ++LDCI+NV
Sbjct: 27  KEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNV 76


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +2

Query: 26  KSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNV 175
           K E ++ R+  +G+ CQ+F+   P  + R   Q++YDE   ++LDCI+NV
Sbjct: 27  KEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNV 76


>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 37  HSTSRETCWSGVPTVFPFF 93
           ++T+ +TCW G P VF FF
Sbjct: 171 NNTALDTCWLGKPEVFTFF 189


>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  LKIVRGIAQFMYDETGERYLDCINNV 175
           L I +G  QF++D  G++YLD    +
Sbjct: 23  LLITKGEKQFLFDSNGKKYLDFFGGI 48


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +2

Query: 11  LQSMPKSETIQLREKHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 178
           L S+P    ++  EK++ +A  +   +   ++ +   +F + E G +    + N A
Sbjct: 10  LPSLPVPSLVETLEKYIDSASAILTPAEKARVEKEAHEFQHSELGAQLQSALENRA 65


>AF000263-15|AAG00018.1|  416|Caenorhabditis elegans Hypothetical
           protein T08B2.11 protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 162 QSRYLSPVSSYMNCAIPR 109
           + +YL  V  YM+CA+PR
Sbjct: 264 ERKYLDYVEDYMSCAMPR 281


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 129  MNCAIPRTIFKGEERKNSWHAAPTCFSRS 43
            +N A+    F+GE  K+ W A   C   S
Sbjct: 1324 INSAVSLLYFRGERDKSDWDAISKCCDTS 1352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,165,984
Number of Sequences: 27780
Number of extensions: 65690
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)