Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a18
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 344 PISYFWLCLAMMCLCSAYIFM 282
           P+SY     A M +C+ ++FM
Sbjct: 300 PVSYLKAVDAFMSVCTVFVFM 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 357 QAGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 473
           Q+ H Q +  A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 382 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 468
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 360 AGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 473
           AG++  RRH    V E Y+    N  +   ++    +R
Sbjct: 26  AGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDR 63


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 249 QLRKRGRRQFPHEDIR*AQAHHRQTQPE 332
           Q+R+R R Q  H D   +Q   +Q Q +
Sbjct: 71  QMREREREQREHSDRVTSQQQQQQQQQQ 98


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 295 AEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHE 399
           ++ + II+  +  Y     +YK   N Y   L+++
Sbjct: 309 SKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,068
Number of Sequences: 438
Number of extensions: 2654
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)