Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a17
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.33 
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    28   1.0  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   3.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   3.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.1  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   4.0  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   5.3  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   5.3  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   7.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.1  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    25   7.1  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   7.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   7.1  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.1  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   9.3  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 SALSNS-HLRPNGRLRSSACIRGSTRAPVPSALNGASP 535
           SALS+S HL+P     SS+ +  S  AP P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 516 ADGTGARVLPRIHALLRSRPLGRRCEFDKADQSTVYNVVRRT 391
           ADG G  V+P    L+ + P   + +FD  D    +    RT
Sbjct: 14  ADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERT 55


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 382 DTNCPAYDIIHCALISFIKFASPSQW 459
           +TNC  Y +I+ A   + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 270 LLVYNVVLSPAGFLEDTSRFVALGNRFVTFFRY 172
           L V + +LSP G  ++TS F+ LGN  ++F  Y
Sbjct: 19  LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 328 VQNFKTTCLSDSLKPQGVDTNCPAYDIIHCALISFIKFASP 450
           V NF    + DS+ P  +   CP Y I H    S   + SP
Sbjct: 272 VLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSP 312


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 211 KTRCIFKESGWAKNNVIDKKKVSDYFE 291
           KT  IFK++G+A  NV+D    S  F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 626 HVLKGVLTSGHDHGVRSRARHALHEPFGTDGAKH 525
           +V+  +L     H V +RAR+ LHE  G  G  H
Sbjct: 155 YVVLRILGMDAGHPVATRARNRLHELGGAIGCPH 188


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +1

Query: 352 LSDSLKPQGVDTNCPAYDIIHCAL--ISFIKFASPSQWSTSEQCVYPRQYAGACPV--CP 519
           + + LK   VDT  P+ +    A   +SF+KF      +  +   Y    +   P   C 
Sbjct: 134 IPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKRLSRAPDQIMRYYHATSNEFPGLWCN 193

Query: 520 ERCFAPSVPNGSCNA 564
             C   S+PN +C A
Sbjct: 194 NECIPSSIPNCACGA 208


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 223 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 312
           IF+E G   +N+ D     DY    + DNP
Sbjct: 13  IFEEKGSTSSNISDNCASRDYDVNISSDNP 42


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 286 FEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGV 381
           FEQF  DNP++       +T+  ++  K  GV
Sbjct: 439 FEQFLYDNPEYQKNTILIQTSTFTEEQKEYGV 470


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 458  HWDGDANLIKLIRAQCIMSYAGQFVSTP 375
            HW    +L+   +  CI  +AGQ +STP
Sbjct: 1163 HWYSLMSLMGTSQGICIPRHAGQVLSTP 1190


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 148 NPKIIQPEVSEKCNKPISE-CDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSA 324
           +P ++ P  ++  + P+   C K     +   W K+          YFE F K +  W A
Sbjct: 159 HPSLLDPVDAKHVHCPVCFLCSKDEDPEEVDAWKKSFENSPYFSESYFETFGKMHHGWMA 218

Query: 325 AVQN 336
           A  N
Sbjct: 219 ARAN 222


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 592 ITVCGAGRGTRYTNHSVLMGRST---VQGRRDRRPRTASDTRTAPKSTIGTEMR 440
           I V  + R T    H+VLM +ST   +Q  + RR  T S +    K T+  + R
Sbjct: 130 IKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQKGTMTQQQR 183


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = -3

Query: 278 ETFFLSITLFLAQPDSLKIHLVLSHSEIGLLHFSDTSG*IILGLPRHEYIVFGNSPQ*TR 99
           ET  LSI   L +  ++KIHL   +     L    T   + +    +EY+VF NS +   
Sbjct: 255 ETITLSIADELKKMPNVKIHL---NKPAKTLVPHKTQSLVDVNGQAYEYVVFANSSRNLE 311

Query: 98  GCSGMLPLNTPTT 60
                  + TPT+
Sbjct: 312 NLISCPKMETPTS 324


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 580 GAGRGTRYTNHSVLMGRSTVQGRRDRRPRTA 488
           G GRG  +  HSV+    +  GR   R   A
Sbjct: 412 GQGRGQEFAKHSVISSTLSTTGRSAERKNIA 442


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +1

Query: 226 FKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSA 324
           F+++G +K+N  D++ +S Y+E + +   + S+
Sbjct: 580 FRKAGGSKDNAEDEEPISIYYEGYEESMDEASS 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,790
Number of Sequences: 5004
Number of extensions: 58821
Number of successful extensions: 177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)