Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a17
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.26
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 31 0.59
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 31 0.78
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 2.4
01_06_0494 - 29778423-29778647,29778758-29779150 29 2.4
03_02_0744 + 10880496-10880891 29 3.2
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 29 3.2
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 4.2
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 4.2
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 29 4.2
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 4.2
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 4.2
02_03_0347 - 17999780-18000592,18000656-18003019 29 4.2
02_03_0116 - 15440263-15441024,15441097-15443451 29 4.2
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 29 4.2
01_06_0604 + 30536172-30537143 28 5.5
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883... 28 7.3
01_06_1584 - 38441654-38442847 28 7.3
12_01_0724 - 6377023-6379392 27 9.7
07_03_0857 - 22041551-22041871,22042802-22042948,22043048-22043683 27 9.7
03_05_0927 - 28874819-28877098,28877689-28877691 27 9.7
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 27 9.7
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 551 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 423
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 223 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCP-- 396
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 397 -AYDIIHCA 420
YD + CA
Sbjct: 981 ILYDAMDCA 989
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 151 PKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAV 330
PKI QP + +KP++ T K G ++ D+K ++ +F+K + SA++
Sbjct: 179 PKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLA---ARFSKVTGNASASI 235
Query: 331 QNFKTTCLSDSLK 369
+ K LS S+K
Sbjct: 236 SSSKDKVLSASIK 248
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 595 MITVCGAGRGTRYTNHSVLMGRS-TVQGRRDRRPRT 491
M TV A R +Y N SV+ GR+ TV+ R RPRT
Sbjct: 155 MDTVEDAERCIKYLNQSVMEGRNITVEKSRRGRPRT 190
>01_06_0494 - 29778423-29778647,29778758-29779150
Length = 205
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 45 VFITH---RCRGIK-RQHPRTASSLLRRIAKHDILVSWQP*DNSTRSIGKM 185
VF+ H R RG+ R HPR SLL +A I + +P D+ + + K+
Sbjct: 91 VFVFHPASRTRGVAIRFHPRNGRSLLTYVAGSTIFLDGEPKDSLLKPVTKV 141
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 202 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 315
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 22 ALKMLTILFLLPIVVGVLSGNIPEQPRVYCGELPNTIYSC-LGNPKIIQPEVSEKCN 189
ALK L L I L G IP + G+L +T C +GNPK+ P +S +C+
Sbjct: 514 ALKNLNFLTRFNISYNDLEGPIPTE-----GQL-STFTDCFIGNPKLCGPMLSHRCS 564
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 475 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 564
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 430 FIKFASPSQWSTSEQCVYPRQYAGACPV 513
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVIPDPETPTRRWLDDVAN 111
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVVPDPETPTRRWLDDVAN 111
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVVPDPETPTRRWLDDVAN 111
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVVPDPETPARRWLDDVAN 111
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVVPDPETPTRRWLDDVAN 111
>01_06_1164 -
35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFRTCINAAIN 645
S P G+ A ALLR P PD TP R ++ N
Sbjct: 76 STPQGALQAAGALLRHPPVVPDQETPTRRWLDDVAN 111
>01_06_0604 + 30536172-30537143
Length = 323
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 452 PNGRLRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCSAHRD 592
P R+ A + G RAP PS+ G S + R S SA D
Sbjct: 204 PRKNTRARASVSGPCRAPPPSSRRGTSQSCRYSFELPRGSTASAATD 250
>11_02_0151 +
8837444-8837876,8838173-8839434,8839517-8839885,
8839963-8840223,8840230-8840442,8840602-8840967,
8841402-8841667,8842087-8842197,8842288-8842317,
8842444-8842465
Length = 1110
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 455 NGRLRSSACI---RGSTRAPVPSALNGASPHQYRMVRVTRASPCS 580
+GR+R +C +GS +PS++ Y + +T +PCS
Sbjct: 833 SGRVRGQSCRTNWKGSQSTQIPSSVGSVENTTYPVDSITAPTPCS 877
>01_06_1584 - 38441654-38442847
Length = 397
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 10 RDRCALKMLTILFLLPIVVGVLSGNIPEQP 99
R R +L ML++LF LPI V +L ++ QP
Sbjct: 230 RRRVSLLMLSVLFFLPIRVLLLGFSVLPQP 259
>12_01_0724 - 6377023-6379392
Length = 789
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 538 SVPNGSCNACLALLRTP*SCPDVRTPFR 621
S P G+ A ALLR P PD TP R
Sbjct: 76 STPQGALQAAGALLRHPPVVPDPETPAR 103
>07_03_0857 - 22041551-22041871,22042802-22042948,22043048-22043683
Length = 367
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 138 VSWQP*DNSTRSIGKM*QTYFRVRQNEMYLQGIRL 242
V W+P DN+ R + ++ FR+RQ ++ L G+ L
Sbjct: 274 VLWEPSDNAHRHLRQVKFYRFRMRQADVALAGLLL 308
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 262 DKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLS 357
D +K+ YF++ +NP +S A Q K CL+
Sbjct: 316 DTQKLLGYFKRLNAENPTFSYAFQVEKNDCLT 347
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Frame = +2
Query: 437 NSHLRPNGRLRSSACIRGSTRAP----VPSA----LNGASPHQYRMVRVTRASPCSAHRD 592
N H P + S CI + VP A +NG PH YR+ + P H +
Sbjct: 332 NGHRMPENPITPSHCIERAALKEHLNHVPHAKAAVMNGQMPHSYRLAQNPILPP--NHIE 389
Query: 593 HVQTSEHLSE 622
Q E+LSE
Sbjct: 390 GYQVMENLSE 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,645
Number of Sequences: 37544
Number of extensions: 406433
Number of successful extensions: 1253
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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