Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a17
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 31 0.70
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 31 0.70
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 29 2.1
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 28 4.9
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 28 4.9
AC024817-41|AAY86306.1| 152|Caenorhabditis elegans Hypothetical... 28 6.5
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Frame = +1
Query: 469 EQCVYPRQYA--GAC-PVCPERCFAPSVP--NGSCNA 564
++CV P ++A +C +CPE C PSVP +G+C+A
Sbjct: 778 QRCVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 814
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Frame = +1
Query: 469 EQCVYPRQYA--GAC-PVCPERCFAPSVP--NGSCNA 564
++CV P ++A +C +CPE C PSVP +G+C+A
Sbjct: 569 QRCVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 605
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 31.1 bits (67), Expect = 0.70
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Frame = +1
Query: 103 VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 282
V C P +C G KI +VSEK + + D +R + WA+ +D +V D
Sbjct: 988 VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047
Query: 283 YFEQFA--KDNPDWSAAVQNFKTTCLSDSLKPQGV-DTNCPAYDIIHCALISFIKFASPS 453
+ A ++ + +++ +D L QG + YDI + P
Sbjct: 1048 SADPTAALQEIMESPDRLRDLDLDAFADELSRQGFGEKKSTLYDISSELSARYKDLRQPF 1107
Query: 454 QWSTSE 471
Q T E
Sbjct: 1108 QEPTGE 1113
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 31.1 bits (67), Expect = 0.70
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Frame = +1
Query: 103 VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 282
V C P +C G KI +VSEK + + D +R + WA+ +D +V D
Sbjct: 988 VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047
Query: 283 YFEQFA--KDNPDWSAAVQNFKTTCLSDSLKPQGV-DTNCPAYDIIHCALISFIKFASPS 453
+ A ++ + +++ +D L QG + YDI + P
Sbjct: 1048 SADPTAALQEIMESPDRLRDLDLDAFADELSRQGFGEKKSTLYDISSELSARYKDLRQPF 1107
Query: 454 QWSTSE 471
Q T E
Sbjct: 1108 QEPTGE 1113
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 31.1 bits (67), Expect = 0.70
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Frame = +1
Query: 103 VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 282
V C P +C G KI +VSEK + + D +R + WA+ +D +V D
Sbjct: 988 VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047
Query: 283 YFEQFA--KDNPDWSAAVQNFKTTCLSDSLKPQGV-DTNCPAYDIIHCALISFIKFASPS 453
+ A ++ + +++ +D L QG + YDI + P
Sbjct: 1048 SADPTAALQEIMESPDRLRDLDLDAFADELSRQGFGEKKSTLYDISSELSARYKDLRQPF 1107
Query: 454 QWSTSE 471
Q T E
Sbjct: 1108 QEPTGE 1113
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 124 NTIYSCLG--NPKIIQPEVSEKCNKPISECDKT-RCIFKESGWAKNNVI 261
NT+Y C+G PK ++ V N P +C T + E+G+A +VI
Sbjct: 251 NTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVI 299
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 190 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 318
+ I++ D R + W K N D+ YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 190 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 318
+ I++ D R + W K N D+ YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 190 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 318
+ I++ D R + W K N D+ YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 190 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 318
+ I++ D R + W K N D+ YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820
>AC024817-41|AAY86306.1| 152|Caenorhabditis elegans Hypothetical
protein Y54G2A.50 protein.
Length = 152
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 166 PEVSEKCNKPISECDKT 216
P +SE +KPISEC KT
Sbjct: 42 PSISETGHKPISECGKT 58
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 454 QWSTSEQCVYPRQYAGACPVCPERCFAPSVPNGSCNACLALLRTP*SCPDV-RTPFRTCI 630
Q ++QCV + P C ++C P + L P CP +T R C+
Sbjct: 154 QQQCTQQCVQTQPIQQCQPQCQQQCVQQCAPRVAPQIVSMNLEVPAQCPQCQQTCHRQCV 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,627
Number of Sequences: 27780
Number of extensions: 352908
Number of successful extensions: 1170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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